LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g2528	ATGTCACTTTCTGGGTCCGTGATAATACTCACTGCCTTTTTCCTCATAAACTTTGTGGTTGTGGCCTTTGCTGGCAACTTCAACCAAGACTTCGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACAATGGGGAACTTCTCACCTTGTCCCTAGACAAAACCTCTGGCTCTGGATTTCGTTCCAAAAATGAATACTTGTTCGGAAAAATTGACATGCAACTAAAGCTTGTGCCTGGTAACTCTGCGGGCACAGTCACAGCCTATTATCTATCTTCTCTTGGGAATGCTCATGACGAAATAGATTTTGAATTTTTGGGTAACTTGAGTGGCGATCCTTATATTCTTCATACAAACGTATTCACACAAGGGAAAGGGAACAGAGAACAACAGTTCTATCTTTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTTTGGAATCCACAGAGCATAATATTCTCTGTGGACGGGACACCCATAAGAGAGTTCAAGAATCTTGAATCAAAAGGGGTTACATTTCCCAAGAACCAAGCCATGAGGATATATTCGAGCCTTTGGAATGCTGATGATTGGGCCACAAGGGGTGGCCTAGTGAAGACTGATTGGAGCAAAGCCCCATTTACTGCATCTTATAGAAACTTCAATGCCCAAGCATGTGTTTGGACTTCTTCTTCAGGCTCCTCTTGCTCTTCCAACAATCCATCATCAAACCAATGGATGAAACAATCACTGGATGCAACAGGGCAAGCTAGAATTCAATGGGTGCAAAAGAACTACATGATTTACAACTATTGTACTGACACTAAGCGTTTTCCACAAGGCCTTCCTACCGAATGTTCACTCGCATGA	861	0.4321	MSLSGSVIILTAFFLINFVVVAFAGNFNQDFEITWGDGRAKILNNGELLTLSLDKTSGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGNAHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVTFPKNQAMRIYSSLWNADDWATRGGLVKTDWSKAPFTASYRNFNAQACVWTSSSGSSCSSNNPSSNQWMKQSLDATGQARIQWVQKNYMIYNYCTDTKRFPQGLPTECSLA*	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g2528	286	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	239	283	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Apr9g2528	286	PIRSF	EndGlu_transf	1	286	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Apr9g2528	286	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	21	215	IPR000757	GO:0004553\|GO:0005975
	Apr9g2528	286	PRINTS	Glycosyl hydrolase family 16 signature	59	77	IPR008264	GO:0004553\|GO:0005975
	Apr9g2528	286	PRINTS	Glycosyl hydrolase family 16 signature	117	130	IPR008264	GO:0004553\|GO:0005975
	Apr9g2528	286	PRINTS	Glycosyl hydrolase family 16 signature	135	152	IPR008264	GO:0004553\|GO:0005975
	Apr9g2528	286	Gene3D	-	15	285	-	-
	Apr9g2528	286	CDD	GH16_XET	24	283	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Apr9g2528	286	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	101	111	IPR008263	GO:0004553\|GO:0005975
	Apr9g2528	286	Pfam	Glycosyl hydrolases family 16	28	208	IPR000757	GO:0004553\|GO:0005975
	Apr9g2528	286	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	285	IPR013320	-
	Apr9g2528	286	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	7	285	-	-
	Apr9g2528	286	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	7	285	IPR044791	GO:0004553

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g2528	Apr-Chr9	32477218	32478941	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g2528	3	286	Glycoside Hydrolase	AT4G25810	72.727	2.33e-155	433

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g2528	K14504		-	gmx:100807063	524.628

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g2528	9	32477218	32478941	Apr1g2350	1	33161602	33163549	PCT