LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g2350	ATGAAAATTAAGTTCCCTATTGGGTTTATTCTTCTTCTTGTAGCCACCTTTGTGGTGGCTGCCACCGCTGGTGACTTTTACAAAGACTTTGAGTTAACATGGGGTGGTGACCGTGCCAAAATCCTTGAAAATGGACAGCTTCTTACTCTGTCCTTAGATAAGGCTTCTGGCTCTGGGTTTCGTTCCAAAAACGAATACTTGTTTGGAAAAATTGACATGCAGCTCAAGCTCGTGCCTGGTAACTCTGCTGGCACTGTCACAGCCTATTATTTATCTTCCCTGGGTTCTACTCATGATGAAATAGACTTTGAATTTCTGGGTAACTTGAGTGGTGATCCATACATTCTTCATACGAACGTATTCACACAAGGAAAGGGGAACAGAGAGCAACAGTTCTATTTGTGGTTCGACCCCACTAGGAACTTCCACACATATTCCGTACAATGGAATCCTCAAAGCATCATATTCTCTGTGGATGGTACACCAATAAGAGAGTTCAAGAATTTGGAGTCAAAAGGGGTTCCATTTCCAAAGAACCAAGCCATGAGGATATACTCTAGTCTTTGGAATGCTGATGAGTGGGCCACAAGGGGTGGGCTTGTGAAAACAGATTGGAGCAAAGCCCCATTCACGGCCTCATATAGAAACTTCAATGCTCAAGCATGTGTTTGGACTTCTTCAGGCTCTTCATGTCCTTCCAACAATGCTCCTTCAGGCCAATCACTGGACGCCACGGGGCAAGCCAAGATTCGTTGGGTGCAAAAGAACTACATGATTTACAACTATTGCACTGATACCAAACGCTTCCCACAAGGCCTTCCTCCTGAATGTTCCTCTCCATGA	843	0.4448	MKIKFPIGFILLLVATFVVAATAGDFYKDFELTWGGDRAKILENGQLLTLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGSTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTRNFHTYSVQWNPQSIIFSVDGTPIREFKNLESKGVPFPKNQAMRIYSSLWNADEWATRGGLVKTDWSKAPFTASYRNFNAQACVWTSSGSSCPSNNAPSGQSLDATGQAKIRWVQKNYMIYNYCTDTKRFPQGLPPECSSP*	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g2350	280	PRINTS	Glycosyl hydrolase family 16 signature	58	76	IPR008264	GO:0004553\|GO:0005975
	Apr1g2350	280	PRINTS	Glycosyl hydrolase family 16 signature	116	129	IPR008264	GO:0004553\|GO:0005975
	Apr1g2350	280	PRINTS	Glycosyl hydrolase family 16 signature	134	151	IPR008264	GO:0004553\|GO:0005975
	Apr1g2350	280	Gene3D	-	12	279	-	-
	Apr1g2350	280	PIRSF	EndGlu_transf	1	280	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Apr1g2350	280	CDD	GH16_XET	21	277	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Apr1g2350	280	Pfam	Glycosyl hydrolases family 16	27	207	IPR000757	GO:0004553\|GO:0005975
	Apr1g2350	280	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	234	277	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Apr1g2350	280	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	20	214	IPR000757	GO:0004553\|GO:0005975
	Apr1g2350	280	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	9	278	-	-
	Apr1g2350	280	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	100	110	IPR008263	GO:0004553\|GO:0005975
	Apr1g2350	280	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	9	278	IPR044791	GO:0004553
	Apr1g2350	280	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	278	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g2350	Apr-Chr1	33161602	33163549	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g2350	9	277	Glycoside Hydrolase	AT4G25810	73.455	3.17e-152	425

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g2350	K14504		-	gmx:100807063	488.804

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g2528	9	32477218	32478941	Apr1g2350	1	33161602	33163549	PCT