Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2509 ATGGCGAGGCTGCTTCGGAACATTTCATTTCTCACCCGCTCCCTGTTCGTCCCTCAGGGCTTTAAACTTGGAATATTCGGCACTTCTCAGATTTTGAACTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAAAACATGTCTAAGAAAGAGTTGGCCCTTCAACAAGCTCTTGATCAGATCACTTCCACATTTGGAAAGGGATCTATAATGTGGCTTGGTCGCTCTGTCTCACCAAGAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATATAGCACTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCGGAGGCGCAGAAGCAAGGAGGGTACTGTGTCTTTGTTGATGCTGAGCATGCCCTAGATAAGACACTTGCAGAGTCTATTGGTGTGAATACAGCAAACTTGCTGCTCTCCCAACCGGACTGTGGTGAACAAGCACTTAGTCTAGTAGATACGTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCGCTTCGAAAATTGAGCCACTCTTTGTCACTTTCTCAAAGTATATTAATTTTTATAAACCAGGTGAGGTCAAAGATTTCGACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGCGGTAATGCATTGAAATTCTATGCTTCTATGCGGTTAAATATCAAGAGAATAGGGTTTGTCAAAAAGGGTGAAGAGATTTTAGGGAGCCAGATTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATATGTAGAGAAACAGAGATTATAGAATTGAGCGTAAAACACAAACTCATCTTAAAGGCTGGTGCAATGTATTACTATAACGAGCGGAATTTTCGTGGTAAGGATGCTCTAAGAAGTTTCCTGGCTGAGAATCACAGTGCATTAGAAGAACTTGAAATCAAGCTCAGGGAGAAGCTTCTTAATGGTGATGAAACAGAAAAGGTGCAAGAATCAGATGTGATTAGTGGAGAAGTTACAGAAGAAATTGCAACCATTGATTCTACTGACGAGGAAGCCACAGATGTTGTAGAAGCATGA 1263 0.4268 MARLLRNISFLTRSLFVPQGFKLGIFGTSQILNFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSTFGKGSIMWLGRSVSPRNVPVVSTGSFALDIALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTANLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGFVKKGEEILGSQILVKVVKNKLAPPFKTAEFELQFGKGICRETEIIELSVKHKLILKAGAMYYYNERNFRGKDALRSFLAENHSALEELEIKLREKLLNGDETEKVQESDVISGEVTEEIATIDSTDEEATDVVEA* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2509 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Apr9g2509 420 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 411 - -
Apr9g2509 420 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 MobiDBLite consensus disorder prediction 37 56 - -
Apr9g2509 420 PANTHER RECA 1 411 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 MobiDBLite consensus disorder prediction 38 55 - -
Apr9g2509 420 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Apr9g2509 420 SMART AAA_5 110 284 IPR003593 -
Apr9g2509 420 SUPERFAMILY RecA protein, C-terminal domain 326 380 IPR023400 -
Apr9g2509 420 ProSiteProfiles RecA family profile 2. 257 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Apr9g2509 420 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr9g2509 420 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Apr9g2509 420 Gene3D - 87 389 IPR027417 -
Apr9g2509 420 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2509 Apr-Chr9 32323445 32328563 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2509 K03553 - gmx:100781271 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2509 9 32323445 32328563 Apr9g2509 9 32323445 32328563 ECH
Apr9g2509 9 32323445 32328563 Apr1g2364 1 33327767 33333246 PCT