Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2364 ATGGCGAGGCTGCTTCGCAACGCTCACACTTCCCTCCTCAAGCGTTCCCTCTTCAACTCCGACCTATTTACGCGGTTGTGCTTTGAACCAGGAGTACTGGGCGCGTCTAAAGTTTTGAGCTTTTCAACTCATAAAGGTAAAAGGCGTTCTAAATCAGATGGAAGTGACTCTGGTGAAGAAAACATGTCTAAGAAAGATTTGGCCCTACAACAAGCTATTGATCAGATCACTTCTGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTATCCCCTAAAAATGTACCTGTTGTGTCGACTGGTTCTTTTGCTCTTGATATAGCACTGGGAGTTGGCGGTCTTCCAAAGGGTCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTTCGGAGGCACAGAAGCTAGGAGGTTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGTGTAAATACTCAGAACTTACTTCTCTCACAACCCGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATATAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGAGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCGCTACGGAAATTATGCCACTCCTTATCACTTTCACAGTGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCGCTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAAAGAGTAGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCTCCTCCATTTAAAACTGTACAGTTTGAGCTTCTGTTTGGCAAGGGCATTAGTAGAGAAGGAGAGATCATTGAGTTGAGCATAAAATACAAACTCATAAAAAAGAATGGTTCATTTTATGAATATAATGGCCAGAATTTCCATGGTAAGGATGCTCTAAAGAAGTTCTTGGCCGAGGGTGATGGTGCACAGGTATTAACAACAAAGCTAAGGGAAAAGATTCTTAATGCCGAGCCAGAACTGGCACCAGAGGCACAGTTGATGGTTGGAGATGTTACAGAAGAAACGGTATCGCTTGATTCTACTGATGAAGAAGCAGCTGCTGCTGTATAA 1275 0.4376 MARLLRNAHTSLLKRSLFNSDLFTRLCFEPGVLGASKVLSFSTHKGKRRSKSDGSDSGEENMSKKDLALQQAIDQITSAYGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSVDIIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRVGFVKKGEETLGSQVLVKVVKNKHAPPFKTVQFELLFGKGISREGEIIELSIKYKLIKKNGSFYEYNGQNFHGKDALKKFLAEGDGAQVLTTKLREKILNAEPELAPEAQLMVGDVTEETVSLDSTDEEAAAAV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2364 424 ProSiteProfiles RecA family profile 2. 265 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Apr1g2364 424 CDD recA 64 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 MobiDBLite consensus disorder prediction 46 63 - -
Apr1g2364 424 PANTHER RECA 1 414 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 Gene3D - 95 392 IPR027417 -
Apr1g2364 424 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 414 - -
Apr1g2364 424 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Apr1g2364 424 Hamap Protein RecA [recA]. 65 403 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 331 IPR027417 -
Apr1g2364 424 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Apr1g2364 424 SMART AAA_5 118 292 IPR003593 -
Apr1g2364 424 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 TIGRFAM tigrfam_recA: protein RecA 65 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr1g2364 424 MobiDBLite consensus disorder prediction 44 64 - -
Apr1g2364 424 SUPERFAMILY RecA protein, C-terminal domain 332 375 IPR023400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2364 Apr-Chr1 33327767 33333246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2364 K03553 - gmx:100798983 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2364 1 33327767 33333246 Apr1g2364 1 33327767 33333246 ECH
Apr9g2509 9 32323445 32328563 Apr1g2364 1 33327767 33333246 PCT