Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2486 ATGCCGAAATTTGAAGGTGGTGGTAAAAAGAGTGGGGAAGAGAAGAACAAGTTGTTAAAAGATGTTGAAACCATAAACAAAGCTCTGGACAGAGAAAAAAGCTCTTCCGTGAATTCAACATCTTCAAAATCCGCCGACAAATCATGTTTACATGATCCCAAATCAATGTCTAAGGATAAGAAATCCAGATGGAGTTGGAAGCCATTGGAGGCCCTTTCCCTCACCCGCGGTAGGAGGTTCAAATGTAGTTTTTCTCTCCATGTCCATTTGATTGAAGGTTTGCCTTCAAGTTTCAATGATTCTTTTCTTTGTGTGTATTGGAAGAGAAAGGATGTGCTTTTGGTGACCCCTCCAGCCAAAGTGATTCAAGGTGCAGCTGAGTTTCAAGAGGTGGTTTTGAATCACCCTTGTTCAATATATGGAAGTAGGAGTGGACCTCACAATTCTGCAAAATATGAAGCTAAGCATTTTTTGCTCTATGCTTCTATGCTTGGCGCGCCGGAACTCGATTTGGGGAAGCACAGGGTGGATCTCACAAGGTTGCTTCCTCTCACACTGGAAGAGCTTGAGGAGGAGAAAAGCTCAGGGAAGTCCACTACAAGTTTTAGATTATCAGGAAAGGCCAGGGGTGCTGTAATGAATGTCACTTTTGGGTATGTTGTTGTTGATTATAATAGTAGTGGTACTAGAGACAACCATGGTGGTGCTCCTAATGTAATGACATCCAGGCAAAGTAGCTTTCATTTGATCGACCCAGATGTCAAACCTAGTCAGGCTAACAGGTTTGTCAGACGTACCGGAAGTTTGCCGAGCTTTACCGGTCATTATTATTCATCTCAAAATGTCGATGAGGTAAAGGATCTTCATGAGGTGTTGCCATCATCAATGTCCGCAGCAGCCAGCTTAGTGGACATTTTATGCAAGGAATTTGATGAGGAAAAGACTTGTAGTCCTCAGCATGACAAACCTCAACTTGAAGGATTTAAAGAAAATATTGAGCCGATGAAACTGGCTGTTTGTTCAACTGATATTGAAAAAGAAAAACCAGAAGAGAATCCAGGTACTGAAGGAAAAACATGCAGTGCAGTGCATGACAAACCAGAATTTAGCATGTTTCTAGAAAACATAGGGACAGTTGAGCCTGACAGTTGTCCTTTACCTGATTCTGGAATAGAAAATCATGAAGAATGCGAAGGTAATGAATTTTCTGTAGTTGATCAGGGCATCGAATTTTCATCAAATGAACATGTTAACCTAGAGGAATCCCTCGTAAAAGTTGTTGTTAATTCTCATACAATTGACGGTATCGGCCCCCTTCATACTGCTGGTATGCAATTATCTTTTCCAGACAGTGCTAGAGAGTATTCCCTGGATGAACTGAATGACAGTTCTAGGGACAGTTTCGTGGTACATGAATTTTCTTATGAAAAGGATGTCGAATGCACGAAAGAACATCTACTGCAAGAACTAGAATCAGCTTTAAATAAAGTCACAGAGTTTGAGACAGTGGCAATGGAATCTCCTAAAATTATTGAAGCCAAATCTGAAAGTAAGATGAGAAAGGCACGTAGCTTGGATGATATTACAGAATCAGTTGCCAGTGAATTTTTAAGTATGCTAGGCATAGACCATAGTCCAAGGGGTTTTAGTTTTGAAACCGAGCCTGAGTCTCCAAGAGAGCGCCTTTTAAGACAATTTGAGAAGGATGCTGAGTCTGAGGGCTTCTCTTTGTTTGATTTTGGCACAGGCAATGATAATGAAGTAGACAGTGGCTATGATGCTTCTTTTGAATCTGAGCAGTGGATGCTTTCTACAGGTATTAAGCCGCCATCCTTTTTGCCAGATCAACAGAAAGGGCATCAAATTCTGTCTGAGTATGTGAGGGGCAAACAGAAAGCACAGATGATAGAAGAGTTGGAAACAGAAGCCTTAATGCGTAAATGGGGTTTGGATGAGAAGACCTTTCAGCCTTCTCCACCGAAAGACTTTACTGGTTTTGGGAGTCCAATACATTTTCTACCTGAAGAGCCTCTCACATTACCTCCTCTGGCAAAGGGGTTAGGTCATCTTCTTCAGACAAAAGATGGGGGGTTTCTACGGTCAATGAATCCCTCACTTTTCACGAATAGTAAAAATTGTGGGAGCTTAATCATGCAGGTTTCTAACCCTCTTGTGATGCCTGCTGAAATGGGTTCTGGGATAATGGAGATTTTGCAGTGTTTGGCTTCAGTGGGACTGGAGAAGCTTTCAAAGCAGGCAAACAAGTTAATGCCTCTGGAAGATATCACAGGGAAGACAATGCAACAAATATCATGGGAAGCGAAGCCAGTCTTGGAGGGAGAACTTTGGCAATGCCATCTGCAACATGATTCGGTAACGGGCCAAGATTCTACTTGCCTGCAAAGGCGCTTGGAAGGAACATTAACTGGTGGACTGAAGTCTGGTAAGTTAAATTCAAGTTGGGTTGGCAATGAGAGAGGCTCAGAGTTTGTTTCATTGGAAGATCTTACTCCATTAGCTATGGACAAAATTGAAGCACTTTCACTGGAGGGTTTGAGAATACAATCTGGGATGTCGGAGGAGGATGCACCATCAAATATAATTGCACAATCCTTTGGGGATTTGTTGGATATAAAAGACAACAGTGATGATGTTGATGGGATAATGGGCCTATCATTAACTCTTGATGAATGGATGAGGCTGGATTCTGGTGACATCGATGATATAGATAATATCAGAAAAAGCCCTGGCAGTAAGGGTGGTTTGTTGGGAAACAATTTCACAGTAGCGTTAATGGTGCAACTCCGTGATCCTTTGAGAAATTATTATCATGTTGGAGCACCAATGCTTGCGCTTATACAAGTCGAGAGAGTGTTTGTCCCACCTAAGCAAAAAATTTACACGTGTGTGTCTGAGGCGGGGAACAATAATGATGAGGATGATGAATGTGAAAGAGTGGCAAGTGTGGAGATGAAGGCCAACAAAGAGGAGGAAAACGCTGAGGAGGAGAGCATTCCTCAGTTCAGAATTGCAGAAGTCCATGTAGCAGGCCTGAAGACCGTCCCTCACAGAAAGAAGCTCTGGGGCACTCCATGCCAACAACAGTCTGGTTCCCGCTGGTTGATTGCTAATGGGATGGGGAAAAGTAATAAGAACCCATTATTGAAATCAAAGGCTGCTTCTAATTCTAGTGCTCAAGCCACCACAAAGGTACAATCTGGTGATACATTGTGGAGCATATCATCCTGTATTTATGGTACTGGAACAAAATGGAAGGAATTGGTAGCACTTAATCCACACATAAGAAATCCCAACATCATCATACCCAATAAAACTATAAGAATACGTTGA 3351 0.4214 MPKFEGGGKKSGEEKNKLLKDVETINKALDREKSSSVNSTSSKSADKSCLHDPKSMSKDKKSRWSWKPLEALSLTRGRRFKCSFSLHVHLIEGLPSSFNDSFLCVYWKRKDVLLVTPPAKVIQGAAEFQEVVLNHPCSIYGSRSGPHNSAKYEAKHFLLYASMLGAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKSTTSFRLSGKARGAVMNVTFGYVVVDYNSSGTRDNHGGAPNVMTSRQSSFHLIDPDVKPSQANRFVRRTGSLPSFTGHYYSSQNVDEVKDLHEVLPSSMSAAASLVDILCKEFDEEKTCSPQHDKPQLEGFKENIEPMKLAVCSTDIEKEKPEENPGTEGKTCSAVHDKPEFSMFLENIGTVEPDSCPLPDSGIENHEECEGNEFSVVDQGIEFSSNEHVNLEESLVKVVVNSHTIDGIGPLHTAGMQLSFPDSAREYSLDELNDSSRDSFVVHEFSYEKDVECTKEHLLQELESALNKVTEFETVAMESPKIIEAKSESKMRKARSLDDITESVASEFLSMLGIDHSPRGFSFETEPESPRERLLRQFEKDAESEGFSLFDFGTGNDNEVDSGYDASFESEQWMLSTGIKPPSFLPDQQKGHQILSEYVRGKQKAQMIEELETEALMRKWGLDEKTFQPSPPKDFTGFGSPIHFLPEEPLTLPPLAKGLGHLLQTKDGGFLRSMNPSLFTNSKNCGSLIMQVSNPLVMPAEMGSGIMEILQCLASVGLEKLSKQANKLMPLEDITGKTMQQISWEAKPVLEGELWQCHLQHDSVTGQDSTCLQRRLEGTLTGGLKSGKLNSSWVGNERGSEFVSLEDLTPLAMDKIEALSLEGLRIQSGMSEEDAPSNIIAQSFGDLLDIKDNSDDVDGIMGLSLTLDEWMRLDSGDIDDIDNIRKSPGSKGGLLGNNFTVALMVQLRDPLRNYYHVGAPMLALIQVERVFVPPKQKIYTCVSEAGNNNDEDDECERVASVEMKANKEEENAEEESIPQFRIAEVHVAGLKTVPHRKKLWGTPCQQQSGSRWLIANGMGKSNKNPLLKSKAASNSSAQATTKVQSGDTLWSISSCIYGTGTKWKELVALNPHIRNPNIIIPNKTIRIR* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2486 1116 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 6 1115 - -
Apr9g2486 1116 ProSiteProfiles C2 NT-type domain profile. 72 221 IPR019448 -
Apr9g2486 1116 Pfam LysM domain 1070 1115 IPR018392 -
Apr9g2486 1116 Coils Coil 476 503 - -
Apr9g2486 1116 Gene3D LysM domain 1058 1116 IPR036779 -
Apr9g2486 1116 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 78 219 IPR019448 -
Apr9g2486 1116 MobiDBLite consensus disorder prediction 27 60 - -
Apr9g2486 1116 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 6 1115 IPR039614 -
Apr9g2486 1116 SMART LysM_2 1068 1116 IPR018392 -
Apr9g2486 1116 MobiDBLite consensus disorder prediction 1052 1071 - -
Apr9g2486 1116 CDD LysM 1070 1115 IPR018392 -
Apr9g2486 1116 ProSiteProfiles LysM domain profile. 1067 1115 IPR018392 -
Apr9g2486 1116 SUPERFAMILY LysM domain 1068 1115 IPR036779 -
Apr9g2486 1116 MobiDBLite consensus disorder prediction 31 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2486 Apr-Chr9 32149878 32153483 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2486 - - lja:Lj4g3v2179220.1 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2486 9 32149878 32153483 Apr9g2486 9 32149878 32153483 ECH
Apr9g2486 9 32149878 32153483 Apr1g2387 1 33524098 33528543 PCT