Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2387 ATGATGTTGTCGAGAATGGAAGCTGGTAAGAAGAGTGGTGGAGGGGGTTCTGGTAGTCAGAAGAAGTTGTTAAAGGATGTTGAAACCATAAACAAAGCTTTGTTCTTGGACAGAAACTTTACAAGGAATTCAACATCTAGTTCAAATTTTCGATCTAAATCCGCTGGGAAACCCCAGTTACCTGATCCCAAATCAAGGTCTAAAGCTAGTACTAATAATAATGGTGATGATAGCTTTCAGAAGGATAAGAAATCCATATGGAATTGGAGGCCCTTAAAGGCCCTTTCTCATATCCGCAATAAGAGGTTCAATTGTAGTTTTTATCTCCAAGTCCATTTGATTGAAGGGTTGCCTTCCACTTTTGATGATGCTAGCCTTGCTGTGTTTTGGAAGAGGCGCGACGGGGTCCTTGTGACCCAACCGGCAAAGGTGACTCAATGTGTAGCTGAATTTGAAGAGAAGTTGACGTACACTTGCTCGGTCTATGGCAGTAGGAGTGGACCTCACCATTCTGCAAAGTATGAAGCAAAGCATTTTTTGCTCTATGCTTCTCTTCTCAGTGCGCCGGAACTTGATTTGGGGAAGCACCGGGTAGATCTCACAAGGTTGCTTCCTCTCACTCTAGAGGAGCTTGAGGAGGAGAAGAGCTCAGGGAAATGGACTACTAGTTTTAGATTAACAGGAATGGCCAAGGGCGCTGTGATGAATGTCAGTTTTGGGTATACGGTGGTTGGTGATAACACTAATGCTACTAGAGATAGCCATAATGCTCCTAATGTATTGACTTCAAGACAGAATAGTCTTGCTTTGACGAGGACAGAAGTTAAATCCAGACAGTTTGATGGAAGCAGCAGCATGAGACGTGTTGGAAGTTTACAAGGCTTTCCTAGTCAGTACTCATCTCAAGCTCCAGATGAGGTAAAGGATCTTCATGAGGTACTGCCATTGTCTAAGTCAGCACTCGCCAGCTCAATTGACACCTTATATAAGAAATTTGAGGAAGAAAAGACATGTAGTCTTCAACACGATGAACCAGAACTTGATGTGTTCAAAGAAAATCTTGGGCCAATCAAACAAGATGCCTATGCTTCATCTGATCTTGGAAAAGAAAAGCCCGAAGAGCATGTGATTGACGATGGAAAAACATGTTCAGTGCATGACAAACCTGAAATCAATGTATTTCAAGAAAACCTGGAGACAGGTCCACCGGATGGCTCCCCTTTACCTGATTCTGGAAAAGAGAACCCTGAACTGTGTCAAGGTAATGAATTTTTTGTTGTTGATAAGGGCATTGAACTGTCACCAAATGAACCCGTTAAACTAGAGGAATCTGACATAACTGGTCCTGAGGACGCTTCTAAAGTTGATACCACCTGTACCCTTGGTATATCAGATATACAAGTATCTTCTGATGACAGTGTTAAATGTGATTTTCTGGATGAGGCAAATGATAGTTCTACGGATCAGGCTGTGGCAGAGGAGTTTACTAGCAAAGAGGAGGGCTTTGACACTCATGAGCTGCTCCTACAAGAACTTGAATCTGCTTTAAATAGTGTCTCAAATTTGGAGAAAGTGGCACTGGAATCTCCCAAAACTACAGAAGCAAAATCTGAATATAAGATGAAAAAGTCATATAGTTTGGACGATGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCATGTTAGGCATAGATCATAGTCCAATGGGCTTAAGTTCTGAAAGCGAGCCAGAGTCTCCAAGAGAGCTCCTTTTAAGACAATTTGAGAAGGAGGCTCTGGATGGGGGTTTTTCTTTGTTTGATTTTAACGCAGACTATGATAATGAAGGAGATGACGACTATGGTGCTTCTACTGCATCTGAGCAGTGGAACTTCTCTGAAGGTGTTAGGTCATCATCCTTTTTGCAAGATCTGCAGGAGGAGCATCTAGTTGAGTCTCAGGACTTGAGGAGCAAACAGAGGGCTCAGATACTAGAAGACTTGGAGACAGAAGCCTTGATGCGTGAATGGGGCTTGAACGAGGAGGCTTTTCATCATTCTCCTCCCAAAGATTGTGCTGGTTTTGGAAGTCCGATTCATATGTCACCTGAAGAGCCTCCTACATTGCCTCCTCTTGCTGAGGGATTGGGCCCTTTTCTTCAGACAAAAGATGGTGGTTTTGTACGGTCTATGAATCCCTCACTTTTCAAGAACAGTAAAAGTGGTGGGAGCTTAATCATGCAGGTATCCAACCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGAATCATGGAGATTATGCAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTCTCAATGCAGGCCAAGGAGTTGATGCCCCTGGAAGATATCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTGTCTTAGAGGGAACTGAGAGGTTACATGATTCAATGACAGGGAAAGATATTGCTTGTCTGCAAAGGGACTTGAAAGGAACACCATCTGCGACAAAGTCTGGTAAGCTTAGTTCAAGTTCGGTGGCCAACCAAACAGGCTCAGAGTTTGTCTCATTGGAAGGTCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGGATGTCAGAAGAGGAAGCACCTTCAAACATCATTGCTCAATCCATTGGGGATATTTCAGCTCTCCAGGGCAAGGGGTTTGATGATAGTGGGACCCTTGGCCTGGATGGAGCTGCTGGTTTGCAATTGATGGACGTAAAAGACAGTGGTGATGGTGTTGATGGGATAATGAGCCTATCATTAACTCTTGATGAATGGATGAAGCTGGATTCTGGTGAGATTGATGATATAGATAATATTAGTGAGCATACGTCCAAACTTCTTGCAGCCCATCATGCTAATTCTTTTGACTTCATTCGTGGGAGTTCAAAGGGAGAGAGGAAACGGGGCAAAAGCAGAAAATGCGGTTTGCTAGGAAACAATTTCACCGTGGCATTAATGGTGCAACTCCGTGATCCTCTGAGAAATTATGAGCCGGTTGGAACTCCAATGCTTGCTCTCATACAAGTTGAGAGAGAGTTCATTCTCCCAAAGCAGAAAATTTACAGCAGTGTGTCTGAGATCAGAAACAACAACAATGAGGATGATGAGAGCGAGATAGTGGCAAAAGTGGAGATCAAGGACACCAATTTAGAGGAGAAATTTTCTGAAGAGGAAGAGAGCATTCCTCAGTTCAGAATTACTGAAGTCCATGTGGCAGGTCTGAAACCTGAGCCTCAAAAAAAGAAACTTTGGGGCAATTCAAGCCAGCAACAATCTGGTTCGCGCTGGTTGCTCGCTAATGGAATGGGAAGGAGCAATAATAAGCTTTCATTAATGAAGTCTAAGGCTTCATCGAAATCTGGTGGCCCAGTTACCACAAAGGTGCAACCTGGTGACACCTTGTGGAGCATATCATCTCGAATTTATGGCACAAGAGCAAAATGGAAGGAATTGGCAGCACTAAATCCTCATATAAGAAATCCCAATGTCATTATACCAAATGACACTATAAGGCTTAGTTGA 3564 0.4321 MMLSRMEAGKKSGGGGSGSQKKLLKDVETINKALFLDRNFTRNSTSSSNFRSKSAGKPQLPDPKSRSKASTNNNGDDSFQKDKKSIWNWRPLKALSHIRNKRFNCSFYLQVHLIEGLPSTFDDASLAVFWKRRDGVLVTQPAKVTQCVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLTGMAKGAVMNVSFGYTVVGDNTNATRDSHNAPNVLTSRQNSLALTRTEVKSRQFDGSSSMRRVGSLQGFPSQYSSQAPDEVKDLHEVLPLSKSALASSIDTLYKKFEEEKTCSLQHDEPELDVFKENLGPIKQDAYASSDLGKEKPEEHVIDDGKTCSVHDKPEINVFQENLETGPPDGSPLPDSGKENPELCQGNEFFVVDKGIELSPNEPVKLEESDITGPEDASKVDTTCTLGISDIQVSSDDSVKCDFLDEANDSSTDQAVAEEFTSKEEGFDTHELLLQELESALNSVSNLEKVALESPKTTEAKSEYKMKKSYSLDDVTESVASEFLSMLGIDHSPMGLSSESEPESPRELLLRQFEKEALDGGFSLFDFNADYDNEGDDDYGASTASEQWNFSEGVRSSSFLQDLQEEHLVESQDLRSKQRAQILEDLETEALMREWGLNEEAFHHSPPKDCAGFGSPIHMSPEEPPTLPPLAEGLGPFLQTKDGGFVRSMNPSLFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEIMQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPVLEGTERLHDSMTGKDIACLQRDLKGTPSATKSGKLSSSSVANQTGSEFVSLEGLAPLAMDKIEALSMEGLRIQSGMSEEEAPSNIIAQSIGDISALQGKGFDDSGTLGLDGAAGLQLMDVKDSGDGVDGIMSLSLTLDEWMKLDSGEIDDIDNISEHTSKLLAAHHANSFDFIRGSSKGERKRGKSRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFILPKQKIYSSVSEIRNNNNEDDESEIVAKVEIKDTNLEEKFSEEEESIPQFRITEVHVAGLKPEPQKKKLWGNSSQQQSGSRWLLANGMGRSNNKLSLMKSKASSKSGGPVTTKVQPGDTLWSISSRIYGTRAKWKELAALNPHIRNPNVIIPNDTIRLS* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2387 1187 Gene3D LysM domain 1128 1187 IPR036779 -
Apr1g2387 1187 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1186 IPR039614 -
Apr1g2387 1187 ProSiteProfiles LysM domain profile. 1138 1186 IPR018392 -
Apr1g2387 1187 SMART LysM_2 1139 1187 IPR018392 -
Apr1g2387 1187 SUPERFAMILY LysM domain 1138 1186 IPR036779 -
Apr1g2387 1187 CDD LysM 1141 1186 IPR018392 -
Apr1g2387 1187 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 100 246 IPR019448 -
Apr1g2387 1187 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g2387 1187 ProSiteProfiles C2 NT-type domain profile. 95 243 IPR019448 -
Apr1g2387 1187 Coils Coil 505 525 - -
Apr1g2387 1187 MobiDBLite consensus disorder prediction 42 80 - -
Apr1g2387 1187 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1186 - -
Apr1g2387 1187 Pfam LysM domain 1141 1186 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2387 Apr-Chr1 33524098 33528543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2387 - - gmx:100815106 1695.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2387 1 33524098 33528543 Apr1g2387 1 33524098 33528543 ECH
Apr9g2486 9 32149878 32153483 Apr1g2387 1 33524098 33528543 PCT