Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2460 ATGAAGCGCTTGTCATTGCTCATTTTGTTCTTCTGCGTCGCCACCGTAGCAGCTTCCATCTTCGATGACTCCAACCCTATCCGTTTGGTGTCGGACTTGGAATCGCATTTCCTCCACGTGATCGGACAAAGCCGCCACGCGCTCTCCTTCGCACGCTTCGCTTGCAAGTACGGCAAGCGCTACCACTCCGACGACGAGATCAAGCACCGATTTCAGATCTTCTCCGATAATCTCCTACTCATCAGATCCATCAACAAGAAGCCACTCACTTACACTCTCGCCGTTAATCATTTCGCTGACTGGACTTGGGAGGAGTTCACCAGACACAGACTCGGCGCGGCTCAAAATTGCTCTGCCACCCGTAAAGGTAGCCACAAGCTTACCGATGCTGTTCTTCCTCAGGAGAAAGACTGGAGGAAAGAAGGTATAGTCAGCGAAGTTAAGGATCAAGGGCACTGTGGATCTTGCTGGTCATTCAGCACAACTGGAGCATTGGAGGCAGCGTACGCGCAAGCTTTTGGAAAGAATATCTCTCTCTCTGAGCAGCAGTTAGTGGATTGTGCTGGTGCTTTCAATAACTTTGGTTGTAATGGTGGGTTGCCGTCCCAAGCCTTTGAATACATTAAATACAATGGTGGCCTTGAGACAGAGGATGCATATCCATATACTGGAAAAGATGGTGTCTGCAAATTTGCTGGTGAAAACGTTGCTGCTCAAGTCATTGACTCTGTCAACATTACCTTGGGTTCTGAGGATGAATTGAAACATGCAGTTGCTTTTGTTCGGCCAGTTAGTGTGGCATTTGAGGTGGTGAGTGGCTTCCAATTCTACAAGAAAGGAGTGTACACTAGTAACACTTGTGGCAGCAAGCCCATGGATGTGAATCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAGATGGTATTCCATACTGGCTCATTAAAAATTCATGGGGAAATGACTGGGGTGACAATGGCTACTTCAAGATGGAATTGGGGAAGAATATGTGCGGTGTTGCAACTTGTGCGTCTTATCCTATTCTGGTTTAA 1050 0.4752 MKRLSLLILFFCVATVAASIFDDSNPIRLVSDLESHFLHVIGQSRHALSFARFACKYGKRYHSDDEIKHRFQIFSDNLLLIRSINKKPLTYTLAVNHFADWTWEEFTRHRLGAAQNCSATRKGSHKLTDAVLPQEKDWRKEGIVSEVKDQGHCGSCWSFSTTGALEAAYAQAFGKNISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIKYNGGLETEDAYPYTGKDGVCKFAGENVAAQVIDSVNITLGSEDELKHAVAFVRPVSVAFEVVSGFQFYKKGVYTSNTCGSKPMDVNHAVLAVGYGVEDGIPYWLIKNSWGNDWGDNGYFKMELGKNMCGVATCASYPILV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2460 349 Gene3D Cysteine proteinases 41 348 - -
Apr9g2460 349 Pfam Papain family cysteine protease 132 347 IPR000668 GO:0006508|GO:0008234
Apr9g2460 349 SMART Inhibitor_I29_2 50 106 IPR013201 -
Apr9g2460 349 PANTHER THIOL PROTEASE ALEURAIN 28 346 - -
Apr9g2460 349 CDD Peptidase_C1A 133 346 IPR039417 -
Apr9g2460 349 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Apr9g2460 349 SUPERFAMILY Cysteine proteinases 45 347 IPR038765 -
Apr9g2460 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 311 330 IPR025661 -
Apr9g2460 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Apr9g2460 349 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Apr9g2460 349 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Apr9g2460 349 PRINTS Papain cysteine protease (C1) family signature 311 317 IPR000668 GO:0006508|GO:0008234
Apr9g2460 349 SMART pept_c1 132 347 IPR000668 GO:0006508|GO:0008234
Apr9g2460 349 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 346 - -
Apr9g2460 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2460 Apr-Chr9 31974394 31977747 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2460 K01366 - gmx:100787165 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2460 9 31974394 31977747 Apr9g2460 9 31974394 31977747 ECH
Apr9g2460 9 31974394 31977747 Apr1g2414 1 33741180 33746839 PCT