Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2414 ATGGAACGGTTGTCAGTGGTGTGGTGCTCGGTGGCGGTGCTATTGTGCGCCGTGGCAGGCGCATCGTGGTTGGAGGAGTCGAACCCAATCCGAATGGTGTCGGACGAGGTACGACAGGTGGAGGCTGAGGTGGTTGGGGTGATAGGGCGTTGCAGGCACGCGCTTTCGTTTGCGCGGTTCGTTCACAGGTTCGGGAAGAAGTACCGAAGCGACGAAGAGATGAAGCAGAGGTTCGAGATATTCTCAGAAAACCTAAGGTTCATTCGTTCAACCAACAAGAAGCGCTTGTCCTACACTCTCGCTGTTAATCATTTGAGTGATTTGACTTGGGAAGAGTTCCAAAGACACAGATTAGGCGCTGCCCAAAATTGCTCTGCCACTCATAAGGGCAACCACAAGCTTACCGATGTTGTTCTTCCTCTCGAGAAAGACTGGAGAAAAGAAGGAATAGTCAGCGCAGTCAAAGATCAAGGCGGCTGCGGATCATGCTGGACATTCAGCACAACTGGGGCTTTAGAAGCAGCCTATGCACAGGCATTTGGAAAGAACATATCTCTTTCTGAGCAGCAGTTAGTGGATTGTGCTGGTCGTTTTAATAACTTTGGCTGTCATGGTGGATTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGACTTGAGACAGAGGAAGCATATCCCTACACTGCAAGAGATGGTGTCTGCAAGTTCTCAGCTGAAAATATTGCTGTTCAAGTTCTTAACTCTGTTAACATCACCTTGGGTGCTGAGGATGAGTTAAAACATGCAGTTGCACTTGTTAGGCCAGTTAGTGTGGCATTTGAGGTGGTGGATGGTTTCCGACACTACAAGAAAGGAGTATACACCAGTAACACTTGCGGTAGCACTTCCCAGGATGTGAATCATGCCGTTCTTGCTGTTGGGTATGGAGTGGAAGATGGTGTCCCATATTGGCTCATTAAAAATTCATGGGGAGAGGACTGGGGTGACAATGGCTACTTCAAGATGGAGATGGGAAAGAACATGTGTGTTGCAACCTGTGCATCTTATCCTATTGTAGCCTAA 1068 0.4813 MERLSVVWCSVAVLLCAVAGASWLEESNPIRMVSDEVRQVEAEVVGVIGRCRHALSFARFVHRFGKKYRSDEEMKQRFEIFSENLRFIRSTNKKRLSYTLAVNHLSDLTWEEFQRHRLGAAQNCSATHKGNHKLTDVVLPLEKDWRKEGIVSAVKDQGGCGSCWTFSTTGALEAAYAQAFGKNISLSEQQLVDCAGRFNNFGCHGGLPSQAFEYIKYNGGLETEEAYPYTARDGVCKFSAENIAVQVLNSVNITLGAEDELKHAVALVRPVSVAFEVVDGFRHYKKGVYTSNTCGSTSQDVNHAVLAVGYGVEDGVPYWLIKNSWGEDWGDNGYFKMEMGKNMCVATCASYPIVA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2414 355 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 21 352 - -
Apr1g2414 355 SMART Inhibitor_I29_2 57 113 IPR013201 -
Apr1g2414 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 301 311 IPR025660 -
Apr1g2414 355 SMART pept_c1 139 353 IPR000668 GO:0006508|GO:0008234
Apr1g2414 355 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Apr1g2414 355 PRINTS Papain cysteine protease (C1) family signature 303 313 IPR000668 GO:0006508|GO:0008234
Apr1g2414 355 PRINTS Papain cysteine protease (C1) family signature 318 324 IPR000668 GO:0006508|GO:0008234
Apr1g2414 355 Gene3D Cysteine proteinases 49 354 - -
Apr1g2414 355 PANTHER THIOL PROTEASE ALEURAIN 21 352 - -
Apr1g2414 355 SUPERFAMILY Cysteine proteinases 54 349 IPR038765 -
Apr1g2414 355 CDD Peptidase_C1A 140 352 IPR039417 -
Apr1g2414 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Apr1g2414 355 Pfam Papain family cysteine protease 139 351 IPR000668 GO:0006508|GO:0008234
Apr1g2414 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 318 337 IPR025661 -
Apr1g2414 355 Pfam Cathepsin propeptide inhibitor domain (I29) 57 113 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2414 Apr-Chr1 33741180 33746839 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2414 K01366 - gmx:547734 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2414 1 33741180 33746839 Apr1g2414 1 33741180 33746839 ECH
Apr9g2460 9 31974394 31977747 Apr1g2414 1 33741180 33746839 PCT