Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2446 ATGGTGGAGACCTCAACGCTAGGGCGGTTCCACCATCAAAGACTCGACTTTAAGCGCTGGGTTCCAGCATTCTTGACCTCGCACAAGACCCTCTTCACGGTTCTTTGGATCGTCGCATTTGCCTCCGTTTTCATGTGGCAGAGGTACACAGTGGGTGGGTTCTCGGTGTTTGGAGGGGTTCCGGCGAGACCCATGCCGAAGCTCCGGCCGATGGCTTTCAATTTGACGGATTTTGGAGGAGTGGGTGATGGGGTTACTCTCAACACTGAGGCTTTTGAGAGAGCTGTTTCTGCCATCTCTAAATTCGGAAAGAAAGGTGGGGCACAGTTAAATGTGCCTCCCGGTCGTTGGCTAACGGCGCCGTTTAATCTTACAAGCCATATGACTCTATTTCTAGCTCAAGATGCCGTTATACTTGGCATTGATGATGAAAAATATTGGCCACTGATGCCTCCATTGCCCTCGTATGGATATGGGAGGGAGCATCCTGGGCCTCGATATGGAAGTTTGATTCATGGCCAAAATCTTAAAGATGTTGTGATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGAAAAAATTTCGCCAGAAGCGTCTTAACTACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGATATTGTGATCACTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACAATATTGGCTCCTGTTTTTGAAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAGAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCAATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCATTTCAATAGGCAGCGAAATGTCTGGTGGGGTATCCAATGTGACGGTGGAGAATCTTCTTGTATGGGATTCTAGGCGTGCTGTGAGAATCAAGACTGCCCCTGGACGAGGTGGATATGTGCGCCAAATAACTTATCGGAATCTAACATTTGAGAATGTCAGGGTTGGAATTGTGATGAAGACGGATTACAATGAACACCCTGATGATGGGTATGACCCCAGAGCAATTCCAATACTCAGAGACATAAGCTTTACCACTGTCCATGGTCAAGGAGTTCGTGTGCCGGTACGTATTCATGGTAGTGAAGAGATTCCTGTGAGAAATGTGACTTTTCAAGATATGTCAGTGGGTCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCCTTTGTTGAAGGGCGGGTGATAGGGGCCATCTTTCCTGCTCCCTGTGAGAACCTTGATCAATACAATGAGCAAGGACAGCTGGTCAAGCATTCTGCATCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1476 0.4546 MVETSTLGRFHHQRLDFKRWVPAFLTSHKTLFTVLWIVAFASVFMWQRYTVGGFSVFGGVPARPMPKLRPMAFNLTDFGGVGDGVTLNTEAFERAVSAISKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAQDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQTWWKKFRQKRLNYTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNVTVENLLVWDSRRAVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDPRAIPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVEGRVIGAIFPAPCENLDQYNEQGQLVKHSASQNVTDIDYDF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2446 491 Gene3D - 62 452 IPR012334 -
Apr9g2446 491 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 21 489 - -
Apr9g2446 491 SMART pbh1 240 267 IPR006626 -
Apr9g2446 491 SMART pbh1 302 324 IPR006626 -
Apr9g2446 491 SMART pbh1 268 289 IPR006626 -
Apr9g2446 491 SMART pbh1 359 380 IPR006626 -
Apr9g2446 491 SMART pbh1 330 351 IPR006626 -
Apr9g2446 491 SMART pbh1 420 441 IPR006626 -
Apr9g2446 491 PANTHER PECTIN LYASE-RELATED 21 489 - -
Apr9g2446 491 Pfam Glycosyl hydrolases family 28 168 450 IPR000743 GO:0004650|GO:0005975
Apr9g2446 491 SUPERFAMILY Pectin lyase-like 64 464 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2446 Apr-Chr9 31853994 31860043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2446 9 490 Glycoside Hydrolase AT1G19170 75.960 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2446 - - gmx:100818529 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2446 9 31853994 31860043 Apr9g2446 9 31853994 31860043 ECH
Apr9g2446 9 31853994 31860043 Apr1g2430 1 33900332 33904245 PCT