Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2430 ATGGTGGAGAGTTCAGTGTCAGGGTCATGGATACATGGGTGGATGCAGTTCCACTCCAAAACGACGCCATTTGCGTCTCACAAGACCCTGTTTGGGTTCCTGTGGGTTGCGGCGTTGGCGTCGGTGATGGTGTGGCAGAGGAACGCAATAAGTGGGTATTTGGTGTTGGGTGGTGTTTCGGTGCCGATGCTGAGACCAGTGGTTTTTGATTTGAGGGAGTTTGGTGGGGTTGGTGACGGGGTCACTCTTAACACTGAGGCCTTTGAGAGAGCCATTGATGCGATATCAAAGCTTGGAAAAGAGGGTGGCGCACAGCTTAACGTGCCACCTGGTCGCTGGCTCACAGCACCCTTTAATCTCACAAGTCACATGACTCTTTTCCTTGCTCAGGATTCTGTCATTCTCGCAATTCAGGATGAGAAGTATTGGCCACTGATGCCTGCATTGCCTTCATACGGGTATGGAAGGGAGCACATTGGACCTCGATACAGCAGTTTGATTCATGGTCAAAATCTTAGAGATGTTGTCATAACAGGGCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCGCCAGAAGCTTCTAAACCATACAAGGGGTCCACTTGTTCAGATATTGTGGTCTAGTAACATTGTAATCTCAAACATTACTTTGCGTGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAATGTCACGATAAAAAATGTTACAATATTGGCTCCTGTATCTCATGCTCCAAATACTGATGGCATAGACCCTGATTCTTGTGAAGATATGTTAATTGAGGACTGTTTCATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAATATGGAATTACTTATGGAAGGCCTTCAAGGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGAGTATCCAATGTCCTTGTGGAGAACATACTTGTATGGGAATCAAAGCGCGCCATGAGGATCAAAACCGCACCTGGAAGAGGAGGATATGTGCGACAAATAGCTTTCAGAAATTTAATCTTTAAGAATGTTCGTGTTGGAATTGTTATCAAGACAGATTATAATCAACACCCTGATAGTGGATATGATCCTAGAGCACTACCAGTACTCAGAGACATAAGCTTCACTACTATTCGTGGCAAGGGAGTTCGTGTTCCAGTACGCATTCAAGGTAGTGAACATATTCCAGTTAAAAATGTAACTTTTCAAGATATGAAGGTTGGGATAACCTACAAGAAGAAGCATATCTTCCAGTGTGCATTTGTCCAAGGTCAAGTAATAGGTACCATTTTTCCTGCTCCCTGTGAGAACTTTGATCAGTACAATGAACAAGGGCAATTGGTTAAGCATGCTGCATCAAAGAATGTAACAGACATAGATTATGAAATTTGA 1464 0.4351 MVESSVSGSWIHGWMQFHSKTTPFASHKTLFGFLWVAALASVMVWQRNAISGYLVLGGVSVPMLRPVVFDLREFGGVGDGVTLNTEAFERAIDAISKLGKEGGAQLNVPPGRWLTAPFNLTSHMTLFLAQDSVILAIQDEKYWPLMPALPSYGYGREHIGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVSHAPNTDGIDPDSCEDMLIEDCFISVGDDAIAIKSGWDQYGITYGRPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESKRAMRIKTAPGRGGYVRQIAFRNLIFKNVRVGIVIKTDYNQHPDSGYDPRALPVLRDISFTTIRGKGVRVPVRIQGSEHIPVKNVTFQDMKVGITYKKKHIFQCAFVQGQVIGTIFPAPCENFDQYNEQGQLVKHAASKNVTDIDYEI* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2430 487 Gene3D - 55 450 IPR012334 -
Apr1g2430 487 Pfam Glycosyl hydrolases family 28 164 447 IPR000743 GO:0004650|GO:0005975
Apr1g2430 487 PANTHER PECTIN LYASE-RELATED 20 485 - -
Apr1g2430 487 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 20 485 - -
Apr1g2430 487 SUPERFAMILY Pectin lyase-like 54 460 IPR011050 -
Apr1g2430 487 SMART pbh1 326 347 IPR006626 -
Apr1g2430 487 SMART pbh1 298 320 IPR006626 -
Apr1g2430 487 SMART pbh1 264 285 IPR006626 -
Apr1g2430 487 SMART pbh1 355 376 IPR006626 -
Apr1g2430 487 SMART pbh1 416 437 IPR006626 -
Apr1g2430 487 SMART pbh1 236 263 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2430 Apr-Chr1 33900332 33904245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2430 24 487 Glycoside Hydrolase AT3G42950 71.816 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2430 - - gmx:100800910 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2430 1 33900332 33904245 Apr1g2430 1 33900332 33904245 ECH
Apr9g2446 9 31853994 31860043 Apr1g2430 1 33900332 33904245 PCT