Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2364 ATGGCTTCCATTTCTCTCTCTTTTTCTTCGTCCGTTGTTCCCTCTCCTATTCCTCAAGACAAATCCAAGATTACTCCATACCCCACTTCTCAAGATCCTATCTTTCGTGTTACCCGCTTCACCATTTCACCTCCACCCTCTAAGAATCCTTCTTCTTCTTCACTTCCTAAAAAGAAACACTGGAAACAAGGCGAGTTTCCTGGTATTTCCGAAACATCGTTACCTACGAGGAACACCCCCATCAAGAACCTCAAGAAGAAGTTGGACAAAAAAAACAATGCTAAGGCCTGGGTCAACACTGTCACCGAAACCTTATCTGAACGCGTTGACAAGAAGCAGTGGCTTCAAGCCCTTCAGGTGTTTGACATGCTTAGAGAACAAACCTTTTACCAACCCAAAGAAGGGACTTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCACCGCGCCCACCAGCTTTTTACCACAATGATTGAAGAAGGTTTGGACCCTACTCCTGAATTGTACACCGCATTGCTGGCTGCATATTGCAGGAGCAACCTCATTGATGAGGCCTTTTCAGTTCTTGATGAGATGAAGAAACTCCCTCTGTGCCTGCCTGATGTTTTCACTTACAGTACATTAATAAAGGTTTGTGTGGATGCTTTCAAATTTGAATTGGTTGAGTTTCTGTATGAAGAAATGGCCGAAAGAGGTATCACGCCAAACACTGTCACTCAGAACATTGTGTTGAGTGGGTATGGCAAGGCAGGGAAGTTTGATAGGATGGAGAATGTGTTGTCTAGTATGCTGGAGAGCACTGCCTGCAAGCCAGATGTTTGGACAATGAACACAATTATCAGTGTGTTTGGCAACATGGGTCAGATTGATATGATGGAGAAGTGGTACGAGAAATTTCGTAATTTTGGTATAGAACCAGAAACGCGTACTTTTAACATTTTGATTGGTGCCTATGGAAAGAAGAGAATGTATGACAAGATGTCGTCTGTTATGGAGTATATGCGCAGGTTGCAGTTTCCATGGACGACCTCTACTTACAACAATGTGATTGAAGCATTTGCTGATGTAGGTGATGCAAAGCACATGGAGTGTACGTTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGTCTTATCAATGGTTATGCAAATGCTGGTCTCTTCCATAAGGTAATTAGCAGTGTTCGCTTGGCCGGGAAACTTGAGATAGCTGAGAATACCACCTTTTATAACGCGGTCTTATCTGCATGTGCAAAAGCAGAAGATTTGATGGAAATGGAGAGAGTTTTCAAGCGTATGAAAGATAACCAATGTCAACCAGACATGACAACGTACTCAATCATGGTCGAGGCATATAGAAAAGAGGGTATGAATGACAAAGTATACTATTTGGAGCAGGAAAGGCAGACAATGACGACCGATGATATAAAAGTGAGCCAGCTCGAGGATGAAGAAATCTTTAGTTGA 1494 0.4277 MASISLSFSSSVVPSPIPQDKSKITPYPTSQDPIFRVTRFTISPPPSKNPSSSSLPKKKHWKQGEFPGISETSLPTRNTPIKNLKKKLDKKNNAKAWVNTVTETLSERVDKKQWLQALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLDPTPELYTALLAAYCRSNLIDEAFSVLDEMKKLPLCLPDVFTYSTLIKVCVDAFKFELVEFLYEEMAERGITPNTVTQNIVLSGYGKAGKFDRMENVLSSMLESTACKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRRLQFPWTTSTYNNVIEAFADVGDAKHMECTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAGKLEIAENTTFYNAVLSACAKAEDLMEMERVFKRMKDNQCQPDMTTYSIMVEAYRKEGMNDKVYYLEQERQTMTTDDIKVSQLEDEEIFS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2364 497 Gene3D Tetratricopeptide repeat domain 269 342 IPR011990 GO:0005515
Apr9g2364 497 Gene3D Tetratricopeptide repeat domain 409 482 IPR011990 GO:0005515
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Apr9g2364 497 MobiDBLite consensus disorder prediction 1 57 - -
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Apr9g2364 497 MobiDBLite consensus disorder prediction 1 80 - -
Apr9g2364 497 Pfam PPR repeat family 415 461 IPR002885 -
Apr9g2364 497 Pfam PPR repeat family 274 321 IPR002885 -
Apr9g2364 497 Pfam PPR repeat family 346 393 IPR002885 -
Apr9g2364 497 Pfam PPR repeat family 172 215 IPR002885 -
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Apr9g2364 497 SUPERFAMILY TPR-like 110 302 IPR011990 GO:0005515
Apr9g2364 497 PANTHER ATPASE EXPRESSION PROTEIN 3 1 483 - -
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Apr9g2364 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 136 168 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 171 197 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 313 341 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 419 450 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 348 380 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 278 309 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Apr9g2364 497 TIGRFAM PPR: pentatricopeptide repeat domain 241 276 IPR002885 -
Apr9g2364 497 Gene3D Tetratricopeptide repeat domain 98 268 IPR011990 GO:0005515
Apr9g2364 497 PANTHER OS03G0309800 PROTEIN 1 483 - -
Apr9g2364 497 Pfam PPR repeat 244 269 IPR002885 -
Apr9g2364 497 Pfam PPR repeat 136 165 IPR002885 -
Apr9g2364 497 Gene3D Tetratricopeptide repeat domain 343 408 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2364 Apr-Chr9 31251100 31253324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2364 112 492 Glycosyltransferase AT1G05670 22.539 6.78e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2364 - - gmx:100813729 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2364 9 31251100 31253324 Apr9g2364 9 31251100 31253324 ECH
Apr9g2364 9 31251100 31253324 Apr1g2484 1 34447738 34450430 PCT