Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2484 ATGGCTTCCATATCACAGTCACACTCATTTTCTTCTCCCATTCTCTCTTCTCCCCTTCACCACGCCAAGTCCAACCCCATTTTTCGGGTTACCCGCATCTCACTCGTAGTTTCGGCTTCAGCATCTTCCTTTTCTCTCTCTTCGCTATCCAAAAACAAACAACGAAACCAAAGTAAATTTCCCGAAACATTGTTTCGTGAGAGTATGGAGAAGACAACCATTAACAAAAAGAAGAAAAAGAAGAAGAAGAAGGAAAAAGAGAACAGCGCTAAAGTTTGGGTCCACACTCTCCCCGAAACCTTATCTTATCACATTCACAAGAAGCACTGGAATATAGCCCTTCAGTTATTTGACATGCTTAGAGAGCAACCCTATTACCAACCCAGAGAGGAGACTTACATGAGACTCATTGTGTTGCTTAGAAAATCCGGCCAACCCCATCATGCCCATCAGCTTTTTAACTCTATAATTGAAGATGGTTGTGAAAGTACCAAACTTTATACAGCCTTAATTGCAGCTTATTGTCAGAACAACCTAGTTGATGAGGCATTCTCAATTCTTGATGAGATGAAGAACCTCCCTCATTGCCAGCCTGATATTTTCACTTACACTACCTTGATAAAAGCTCATGTGGATGCTTTGAACTTTGAAATGGTTGAGTTGCTGTATGATGAAATGGCTGAAAGATCTATCATGCCAAACACCCTCACCCAGAACATCGTTCTTGGTGGTTGTGCTAAGGCAGAGAAGTTTGATCAGATGGAGAAAATACTGTCTAGTATGATGGAGAGCACTGCATGCAAGCCCGATATTTTGACAATGAATGCAGTCATCAGGGTCTTTGGTGATAAGGGTCAGACTGATATGATGGAGAAATGGTATGAGAGGTTTCGTAGTTTTGGGATACAACCAAAAACAAGCACTTTTGATATTTTAATTGGAGCTTATGGTAATAAAAAAATGTATGACAAAATGTCATCTGTTATGCAGTATATGCGCAAGGTACAATGTCCATGGACTACCTCAACTTATAACAATGTGATTGAGGCATTTGCAGCTGGAGGTGATGCTGAAAACTTGGAATCTACTTTTGATCAGATGCGTGCCGAGGGTTTGAAAGCAGATACTAAAACTTTCTGCTGCCTTATCAATGGTTATGCCAATGCAGGTATCTTCCATAAAGTAATTAATAGTGTTAGTTTGGCTGAGAAGCTTCAGATACCTGAGAATACTTCCTTTTACAATGCAATCATATCTGCATGTGCAAGGGAAGATGCTTTGAGGGAAATGGAAAGAGCTTTCAAGCGTATGAAAGAAAAACAATGTCAACCAGATGACACAACGTATACTGTCATGATTGAGGCATACAGAAAAGAAGGCATGAATGACAAGATTTACTATCTGGAGCAGGAAAAGCAGATGATATCTGATGACAAAATATTGAATGTGCCTGAGGTAATCCTTGGCTGA 1470 0.4014 MASISQSHSFSSPILSSPLHHAKSNPIFRVTRISLVVSASASSFSLSSLSKNKQRNQSKFPETLFRESMEKTTINKKKKKKKKKEKENSAKVWVHTLPETLSYHIHKKHWNIALQLFDMLREQPYYQPREETYMRLIVLLRKSGQPHHAHQLFNSIIEDGCESTKLYTALIAAYCQNNLVDEAFSILDEMKNLPHCQPDIFTYTTLIKAHVDALNFEMVELLYDEMAERSIMPNTLTQNIVLGGCAKAEKFDQMEKILSSMMESTACKPDILTMNAVIRVFGDKGQTDMMEKWYERFRSFGIQPKTSTFDILIGAYGNKKMYDKMSSVMQYMRKVQCPWTTSTYNNVIEAFAAGGDAENLESTFDQMRAEGLKADTKTFCCLINGYANAGIFHKVINSVSLAEKLQIPENTSFYNAIISACAREDALREMERAFKRMKEKQCQPDDTTYTVMIEAYRKEGMNDKIYYLEQEKQMISDDKILNVPEVILG* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2484 489 Coils Coil 69 89 - -
Apr1g2484 489 Coils Coil 423 443 - -
Apr1g2484 489 PANTHER OS03G0309800 PROTEIN 42 477 - -
Apr1g2484 489 Gene3D Tetratricopeptide repeat domain 355 482 IPR011990 GO:0005515
Apr1g2484 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 193 IPR002885 -
Apr1g2484 489 TIGRFAM PPR: pentatricopeptide repeat domain 308 338 IPR002885 -
Apr1g2484 489 TIGRFAM PPR: pentatricopeptide repeat domain 166 199 IPR002885 -
Apr1g2484 489 TIGRFAM PPR: pentatricopeptide repeat domain 343 375 IPR002885 -
Apr1g2484 489 TIGRFAM PPR: pentatricopeptide repeat domain 273 304 IPR002885 -
Apr1g2484 489 TIGRFAM PPR: pentatricopeptide repeat domain 201 235 IPR002885 -
Apr1g2484 489 TIGRFAM PPR: pentatricopeptide repeat domain 237 270 IPR002885 -
Apr1g2484 489 TIGRFAM PPR: pentatricopeptide repeat domain 414 445 IPR002885 -
Apr1g2484 489 Pfam Pentacotripeptide-repeat region of PRORP 222 371 IPR033443 -
Apr1g2484 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Apr1g2484 489 PANTHER ATPASE EXPRESSION PROTEIN 3 42 477 - -
Apr1g2484 489 Gene3D Tetratricopeptide repeat domain 67 229 IPR011990 GO:0005515
Apr1g2484 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Apr1g2484 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Apr1g2484 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 269 IPR002885 -
Apr1g2484 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Apr1g2484 489 Gene3D Tetratricopeptide repeat domain 245 353 IPR011990 GO:0005515
Apr1g2484 489 Pfam PPR repeat 132 161 IPR002885 -
Apr1g2484 489 Pfam PPR repeat family 165 210 IPR002885 -
Apr1g2484 489 Pfam PPR repeat family 410 456 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2484 Apr-Chr1 34447738 34450430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2484 203 465 Miscellaneous Gene Families AT4G11690 18.567 1.08e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2484 - - gmx:100776657 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2484 1 34447738 34450430 Apr1g2484 1 34447738 34450430 ECH
Apr9g2364 9 31251100 31253324 Apr1g2484 1 34447738 34450430 PCT