Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2346 ATGGCGTCCCTGGCTCTGCAATTCAGCGGGTTGAGATGTTCCCCACTCTCATTTTCTCGCTTCTCAAAACCCTTCACTTGGATCCAAACACAGAAGCGCGTTTCGCTTCCCATAGTGAATTCAATAGCAATATCAAATGCACAGAACAAAGAGAGGTTGAAACTTAAGGAACTCTTCCATGAAGCCTACGACAGGTGCCGCACTGCTCCCATGGAAGGTGTTTCCTTCACTCTCGAAGACTTCACTGTGGCTCTCGATAAGTATGACTTTGATTCTGAAGTTGGCACAAAGGTTAAAGGTACTGTGTTCTGCACAGATGCGAATGGTGCAGTTGTTGATATTACTGCAAAGTCCTCAGCGTACTTGCCTTTGCAAGAGGCGTGTATCCACAGGGTTAAGCATGTAGAAGAAGCAGGAATAGTTGGTGGGGTGAGAGAGGAGTTTCTGATCATTGGTGAGAATGAAGCTGATGATAGCTTGATCTTGAGTTTAAGGGCTATTCAGTATGATCTTGCATGGGAACGTTGTAGACAGCTTCAAGCAGAAGATGTTGTTGTCAAGGGTAAGGTTGTTGGTGTAAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGCCTTAGAGGATTTGTTCCACTGTCACAAATATCAACGAACTCAAGTTTAGAAGAGCTTCTAGAGAAGGAGCTTCCTCTTAAGTTTGTGGAGGTAGATGAGGAACAGGCTAGACTTGTCCTCAGTAACCGCAAGGCCATAGCCGGCAACCAGGCACAGCTAGGAATTGGATCAGTAGTTACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCATTCATTGATATTGGTGGAATTAATGGCCTGCTTCATGTTAGTCAGATAAGTCATGACCGGGTAACTGATATTTCAACTGTTCTTCAACCTGGTGACATACTGAAGGTGATGATCTTGAGTCATGATCGAGAGAGAGGTCGAGTGAGTCTTTCCACTAAGAAGTTGGAACCCACACCTGGAGACATGATCCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGAGAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCAGACATGCTTAGGTTCCAACCTGAGAGTGGATTGACTCTCAGCGGTGATGGGATCTTGGGACCATTTACTTCAGACTTGCCTGAGGAGGGAGTGGATCTGAATGAGGTACCACCAGCTCAAGGATTATGA 1233 0.4639 MASLALQFSGLRCSPLSFSRFSKPFTWIQTQKRVSLPIVNSIAISNAQNKERLKLKELFHEAYDRCRTAPMEGVSFTLEDFTVALDKYDFDSEVGTKVKGTVFCTDANGAVVDITAKSSAYLPLQEACIHRVKHVEEAGIVGGVREEFLIIGENEADDSLILSLRAIQYDLAWERCRQLQAEDVVVKGKVVGVNKGGVVAEVEGLRGFVPLSQISTNSSLEELLEKELPLKFVEVDEEQARLVLSNRKAIAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRERIAQAEAMARADMLRFQPESGLTLSGDGILGPFTSDLPEEGVDLNEVPPAQGL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2346 410 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Apr9g2346 410 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Apr9g2346 410 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Apr9g2346 410 PRINTS Ribosomal protein S1 signature 231 251 IPR035104 -
Apr9g2346 410 Gene3D - 79 175 IPR012340 -
Apr9g2346 410 SUPERFAMILY Nucleic acid-binding proteins 90 191 IPR012340 -
Apr9g2346 410 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Apr9g2346 410 CDD S1_RPS1_repeat_ec1_hs1 95 165 - -
Apr9g2346 410 Gene3D - 255 332 IPR012340 -
Apr9g2346 410 Gene3D - 176 254 IPR012340 -
Apr9g2346 410 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Apr9g2346 410 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
Apr9g2346 410 Pfam S1 RNA binding domain 181 245 IPR003029 GO:0003676
Apr9g2346 410 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Apr9g2346 410 CDD S1_RPS1_repeat_hs4 260 328 - -
Apr9g2346 410 Coils Coil 345 365 - -
Apr9g2346 410 PANTHER 30S RIBOSOMAL PROTEIN S1 1 408 - -
Apr9g2346 410 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Apr9g2346 410 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 408 - -
Apr9g2346 410 SMART S1_6 93 165 IPR022967 -
Apr9g2346 410 SMART S1_6 181 247 IPR022967 -
Apr9g2346 410 SMART S1_6 258 328 IPR022967 -
Apr9g2346 410 SUPERFAMILY Nucleic acid-binding proteins 182 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2346 Apr-Chr9 31059524 31062466 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2346 K02945 - gmx:100812847 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2346 9 31059524 31062466 Apr9g2346 9 31059524 31062466 ECH
Apr9g2346 9 31059524 31062466 Apr1g2027 1 29754454 29757990 PCT