Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2027 ATGATGGCGTCTTTGGCTCATCAGTTAAGGTGGTCCTCACTGCCGTCGAAACCAATCCACAACCACCGAAGACGCAACACCGTCGTGTGTTCCATTGCCATTGAAAACGCTCAGAACAAAGAGAGAGCCAAACTCAAACAACTCTTCCAAGACGCCTATGAGAGATGTCGAACTTCTCCCGCCGAAGGTGTCTCCTTCACCTTCGAACAATTCTCCGCCGCTCTCGATAACTACGACTTCGACGCTGAAATTGGAACCAAGGTTAAGGGTACTGTTTTTGCCGCAGATGCGAGTGGAGCTTATGTTGACATTACTGCAAAGTCGACAGCGTACTTGCCTTTGCAAGAGGCAAGCATCTACAGAATTAAGAATGTGGAAGAAGCGGGCATAGTTCCTGGCTTGAAAGAGGAGTTTGTGATCATTGGTGTAAATGAATCGGATGATACATTGATATTGAGTTTGAGGTCTATACAATATGACCTTGCATGGGAACGCTGTCGACAACTTCAATCGGAAGATGCTGTTGTCAAGGGTAAGGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTGCAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCAACGAGAGCAACTGGAGAAGAGCTTCTTGAAAAGGAGATTCCTTTCAAGTTTGTGGAGGTGGATGAGGAACAGTCCAGACTTGTCCTCAGTCACCGTAAAGCTGTGGCTGAGAACCAAGGACAGCTAGGAATTGGATCAGTTGTTACTGGTTCTGTTCAAAGTATAAAACCTTATGGTGCCTTTGTTGACATTGGTGGTATCAGTGGCCTCCTTCATGTCAGTCAAATCAGTCACGATCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCCTAAGTCACGATCGGGAGAGAGGACGAGTAAGTCTTTCCACAAAGAAATTGGAACCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCTCAGACATTCAGACAGAGAATCGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTAAGGTTCCAGCCAGAGAGTGGATTATCTCTCAGCAGTGACGGGATCTTAGGACCACTTGCTTCAGATTTGCCTCCAGAGGGACTGGATCTGAGTGAGGTACCAACAGCTGAAGATTCATGA 1203 0.4638 MMASLAHQLRWSSLPSKPIHNHRRRNTVVCSIAIENAQNKERAKLKQLFQDAYERCRTSPAEGVSFTFEQFSAALDNYDFDAEIGTKVKGTVFAADASGAYVDITAKSTAYLPLQEASIYRIKNVEEAGIVPGLKEEFVIIGVNESDDTLILSLRSIQYDLAWERCRQLQSEDAVVKGKVVNANKGGLVAAVEGLKGFVPFSQISTRATGEELLEKEIPFKFVEVDEEQSRLVLSHRKAVAENQGQLGIGSVVTGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLSLSSDGILGPLASDLPPEGLDLSEVPTAEDS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2027 400 ProSiteProfiles S1 domain profile. 173 237 IPR003029 GO:0003676
Apr1g2027 400 SUPERFAMILY Nucleic acid-binding proteins 249 328 IPR012340 -
Apr1g2027 400 MobiDBLite consensus disorder prediction 374 400 - -
Apr1g2027 400 CDD S1_RPS1_repeat_hs4 250 318 - -
Apr1g2027 400 Gene3D - 166 246 IPR012340 -
Apr1g2027 400 SUPERFAMILY Nucleic acid-binding proteins 80 181 IPR012340 -
Apr1g2027 400 Coils Coil 335 355 - -
Apr1g2027 400 CDD S1_RPS1_repeat_ec2_hs2 173 237 - -
Apr1g2027 400 ProSiteProfiles S1 domain profile. 250 318 IPR003029 GO:0003676
Apr1g2027 400 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 19 400 - -
Apr1g2027 400 SUPERFAMILY Nucleic acid-binding proteins 172 240 IPR012340 -
Apr1g2027 400 SMART S1_6 248 318 IPR022967 -
Apr1g2027 400 SMART S1_6 171 237 IPR022967 -
Apr1g2027 400 SMART S1_6 83 155 IPR022967 -
Apr1g2027 400 ProSiteProfiles S1 domain profile. 85 155 IPR003029 GO:0003676
Apr1g2027 400 Gene3D - 68 165 IPR012340 -
Apr1g2027 400 Pfam S1 RNA binding domain 172 237 IPR003029 GO:0003676
Apr1g2027 400 Pfam S1 RNA binding domain 249 318 IPR003029 GO:0003676
Apr1g2027 400 Gene3D - 247 326 IPR012340 -
Apr1g2027 400 PANTHER 30S RIBOSOMAL PROTEIN S1 19 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2027 Apr-Chr1 29754454 29757990 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2027 K02945 - gmx:100806905 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2027 1 29754454 29757990 Apr1g2027 1 29754454 29757990 ECH
Apr9g2346 9 31059524 31062466 Apr1g2027 1 29754454 29757990 PCT