Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2298 ATGCACTCCTCACTATCCCTCTCATTCTCTTCCAGCTCCTCTGCCGCCACCGTTTTCAGATCGCGCCACTCTTCTCCTGCCACCGCTGCCATACCTCTCAATCTCCACTTCTGCGGCTTGAGGCGCGAGGCTTTAGGTTTAGATTTAGGTTTCACTGCTTCTTTCAATCGCCACCGTTCGCAGCTTCCTCGCCGTCCTCACTCTGCCTCTGTTTCGGCTGCGCTCTCTGACAATGGTAGTCCTTCCAAATCCTTTGACTATGACTTGTTGATTATTGGTGCCGGCGTTGGCGGCCACGGTGCCGCGCTTCATGCCGTTGAGAAGGGTTTGAAAACAGCCATTGTAGAGGGAGATGTGGTGGGAGGAACATGTGTGAACAGAGGATGTGTTCCTTCGAAAGCTCTTTTGGCTGTTAGTGGTCGTATGCGAGAACTAAAGAGCGATCATCACTTGAAGTCCTTTGGCTTACAGGTTTCTGCTGCTGGGTATGACAGACAAGGAGTCGCTGATCATGCTAATAATCTTGCTTCGAAAATCCGTAGTAATTTGACCAACTCACTAAAAGCGCTTGGAGTAGACATACTTACGGGTTATGGAACTATTTTGGGTCCTCAGAAGGTGCAAGTTGGCTCTTCAAATAGCATAGTAACTGCTAAAGATATCATCATTGCTACTGGTTCTGTTCCTTTTGTTCCTAAGGGCATTGAAATTGATGGGAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGATTGGATAGCAATTGTGGGAAGTGGTTATATTGGGCTTGAGTTTAGTGATGTATATACAGCACTTGGAAGTGAGGTTACTTTTATTGAAGCTGTGGATCAACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAAAGAGTTCTTATAAATCCGCGGAACATAGACTATCATACTGGAGTTTTTGCAAATAAGATCACTCCTGCAAGGGATGGAAAACCTGTCTTGATTGAGCTTATTGATGCAACGACTTTGGAACCAAAGGACACTTTGGAGGTTGACACTGCATTAATTGCAACTGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAAAATATTGACGTGGTAACACAGCGTGGTTTTGTTCCTGTGGATGAGCGTATGCAAGTAATGGATGCAAATGGCAAACTGGTACCTCATTTATACTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACTGGAAGAGATCATGTGGTCAATCATTTAAGTATCCCAGCTGCTTGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGCGAAAGGTGTAGAAGAGGGATTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCTAACACAAAGGCCCTAGCAGAAAATGAAGGGGAGGGACTCGCCAAGTTGATATACAGACCTGACAATGGGGAGATACTAGGAGTTCATATTTTTGGCTTGCATGCAGCTGATCTCATCCATGAAGCTTCCAATGCAATAGCTTTAGGGACATGTATTCAGGACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCTGAGGTTCTTGATGAGTTATTTAAATCAGCAAAGGGACATCCAAAATATTACACATCTTCAGGCGGAAGACACGAGCAGATTCCTCTAAAAGAAGGGAAACGTTTGAGGGAGATCAATAACGGCCTGATAATGGATATCCGCCGAAGGTTACATGTATTGGTATCTTTTTTACTTGATATTTTTATTGCCTGTCAAAGATGCTTATATTATTTGTTATTGTATTTTTTAAGCTAG 1866 0.4378 MHSSLSLSFSSSSSAATVFRSRHSSPATAAIPLNLHFCGLRREALGLDLGFTASFNRHRSQLPRRPHSASVSAALSDNGSPSKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSFGLQVSAAGYDRQGVADHANNLASKIRSNLTNSLKALGVDILTGYGTILGPQKVQVGSSNSIVTAKDIIIATGSVPFVPKGIEIDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAVDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFANKITPARDGKPVLIELIDATTLEPKDTLEVDTALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMQVMDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVVNHLSIPAACFTHPEISMVGLTEPQARAKGVEEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTCIQDIKFAVHAHPTLSEVLDELFKSAKGHPKYYTSSGGRHEQIPLKEGKRLREINNGLIMDIRRRLHVLVSFLLDIFIACQRCLYYLLLYFLS* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2298 621 Gene3D - 87 420 IPR036188 -
Apr9g2298 621 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 21 557 - -
Apr9g2298 621 SUPERFAMILY FAD/NAD(P)-binding domain 74 428 IPR036188 -
Apr9g2298 621 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 87 558 IPR006258 GO:0004148|GO:0050660
Apr9g2298 621 PRINTS FAD-dependent pyridine nucleotide reductase signature 89 108 - -
Apr9g2298 621 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Apr9g2298 621 PRINTS FAD-dependent pyridine nucleotide reductase signature 257 275 - -
Apr9g2298 621 PRINTS FAD-dependent pyridine nucleotide reductase signature 350 366 - -
Apr9g2298 621 PRINTS FAD-dependent pyridine nucleotide reductase signature 384 406 - -
Apr9g2298 621 PANTHER DISULFIDE OXIDOREDUCTASE 21 557 - -
Apr9g2298 621 Pfam Pyridine nucleotide-disulphide oxidoreductase 87 419 IPR023753 GO:0016491
Apr9g2298 621 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 121 131 IPR012999 GO:0016668
Apr9g2298 621 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 438 549 IPR004099 GO:0045454
Apr9g2298 621 Gene3D - 230 357 IPR036188 -
Apr9g2298 621 Gene3D - 437 561 IPR016156 GO:0016491|GO:0050660
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 88 110 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 120 135 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 221 230 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 257 282 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 351 365 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 399 406 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 434 455 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 503 518 - -
Apr9g2298 621 PRINTS Pyridine nucleotide disulphide reductase class-I signature 525 545 - -
Apr9g2298 621 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 437 559 IPR016156 GO:0016491|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2298 Apr-Chr9 30674860 30683174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2298 1 565 Acyl Lipid Metabolism Gene Families AT3G16950 80.141 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2298 K00382 - gmx:100782004 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2298 9 30674860 30683174 Apr9g2298 9 30674860 30683174 ECH
Apr9g2298 9 30674860 30683174 Apr1g2085 1 30394072 30399832 PCT