Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2085 ATGCAATCAACGATTTCGCTCTCTTCCTCTTACGCTGCTTCCATTTGGGAGTCACGCCACTCTTTTCCCATCCCCACTCGCACTTCTGCGCCTTTGAATCTCCGCTTCTGCGGTCTTAGGCGCCAGGCATTCACTTCCACTTCCCTCAACTACTACCGTCGCTCACACTCCACCGCAGTATCCGCTGCGCTTTCCGACAACGGCACCCCTTCCAACTCCTTTGATTACGAGTTGCTCATCATCGGCGCCGGCGTCGGTGGTCACGGCGCCGCGCTTCATGCCGTCGAGAAGGGCTTGAAAACGGCCATTGTCGAGGGAGACGTGGTTGGAGGAACGTGTGTGAACAGAGGTTGTGTTCCTTCTAAAGCTCTTTTGGCTGTTAGTGGTCGTATGCGAGAGTTGCGGGATGATCATCACTTGAAGTCGCTCGGCTTACAGGTTTCTGCTGCTGGGTATGACAGACAAGCAGTGGCTGATCATGCTAATAATCTTGCTTCGAAAATCCGTGGCAACTTGACCAATTCATTGAAAGCACTTGGAGTGGACATCCTCACTGGTTTTGGAGCCATTTTGGGTCCTCAAAAGGTGAAAGTTGGCTCTTCCAACAATGTGGTAACTGCAAAAGACATCATCATTGCTACTGGTTCTGTTCCCTTTGTTCCCAAGGGCATTGAAGTTGACGGGAAGACTGTGATTACCAGTGACCATGCTCTCAAACTGGAGACTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGCTATATTGGGCTTGAATTCAGTGATGTATATACGGCACTTGGAAGTGAGGTTACTTTTATTGAAGCTTTAGATCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGAGTTCTCATTAACCCCCGGAATATTGACTATCATACTGGGGTTTTTGCATCTAAGGTCACTCCTGCAAGAGATGGAAAACCTGTCACAATTGAGCTCATTGATGCGAAGACCAAGGAACAAAAGGAAACTTTAGAGGTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACCCAAGGTCTTGGATTGGAGAATATTAATGTTGTAACACAGCGTGGTTTTGTTCCTGTGGATGAATGCATGCGAGTAATTGATGCCAATGGAAACTTGGTCCCTCATTTGTATTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGCGCACAAGGAATCTCAGTGGTTGAACAAGTCACTGGAAGAGATCATGTGCTTAATCATTTAAGCATACCAGCTGCTTGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACTGAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGCTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCAAACACGAAGGCTTTAGCAGAAAACGAAGGGGAGGGTCTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATTCTAGGGGTTCATATTTTTGGGTTGCATGCTGCTGATCTTATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAAGATATAAAATTTGCGGTTCATGCTCATCCGACTTTGTCTGAGGTGCTTGATGAGCTATTCAAATCAGCAAAGGTTAAGGCACAAGCTTCTGGCCCAGTAAAGGAACCGGTTGCAGTTTAA 1680 0.4661 MQSTISLSSSYAASIWESRHSFPIPTRTSAPLNLRFCGLRRQAFTSTSLNYYRRSHSTAVSAALSDNGTPSNSFDYELLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELRDDHHLKSLGLQVSAAGYDRQAVADHANNLASKIRGNLTNSLKALGVDILTGFGAILGPQKVKVGSSNNVVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLETVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFASKVTPARDGKPVTIELIDAKTKEQKETLEVDAALIATGRAPFTQGLGLENINVVTQRGFVPVDECMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKAQASGPVKEPVAV* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2085 559 Pfam Pyridine nucleotide-disulphide oxidoreductase 77 408 IPR023753 GO:0016491
Apr1g2085 559 Gene3D - 76 414 IPR036188 -
Apr1g2085 559 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 426 540 IPR016156 GO:0016491|GO:0050660
Apr1g2085 559 PANTHER DISULFIDE OXIDOREDUCTASE 13 551 - -
Apr1g2085 559 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 110 120 IPR012999 GO:0016668
Apr1g2085 559 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 76 546 IPR006258 GO:0004148|GO:0050660
Apr1g2085 559 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 427 538 IPR004099 GO:0045454
Apr1g2085 559 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 13 551 - -
Apr1g2085 559 Gene3D - 426 550 IPR016156 GO:0016491|GO:0050660
Apr1g2085 559 Gene3D - 219 346 IPR036188 -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 77 99 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 109 124 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 210 219 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 246 271 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 340 354 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 388 395 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 423 444 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 492 507 - -
Apr1g2085 559 PRINTS Pyridine nucleotide disulphide reductase class-I signature 514 534 - -
Apr1g2085 559 PRINTS FAD-dependent pyridine nucleotide reductase signature 78 97 - -
Apr1g2085 559 PRINTS FAD-dependent pyridine nucleotide reductase signature 207 225 - -
Apr1g2085 559 PRINTS FAD-dependent pyridine nucleotide reductase signature 246 264 - -
Apr1g2085 559 PRINTS FAD-dependent pyridine nucleotide reductase signature 339 355 - -
Apr1g2085 559 PRINTS FAD-dependent pyridine nucleotide reductase signature 373 395 - -
Apr1g2085 559 PIRSF Hg-II_reductase_MerA 39 541 IPR001100 GO:0016491
Apr1g2085 559 SUPERFAMILY FAD/NAD(P)-binding domain 59 417 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2085 Apr-Chr1 30394072 30399832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2085 1 550 Acyl Lipid Metabolism Gene Families AT4G16155 82.011 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2085 K00382 - gmx:100803176 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2085 1 30394072 30399832 Apr1g2085 1 30394072 30399832 ECH
Apr9g2298 9 30674860 30683174 Apr1g2085 1 30394072 30399832 PCT