Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2272 ATGCTAGTGGCATTGCTCTTACTTCTGGCGTTGAGCAATGAAGTGAGAGTTAATGGTGATGGTAGACAATGTGAGTGTAGTCCAACACTGAAGCCAAGGCCACACAGTGTCTCCATTTTGGAGTTTGGTGCGGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAAAATGCCATCTTCTATATCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTATACGTGCCGCCGGGGACATGGTTGACTCAAAGTTTCAATCTTACTAGCCACCTTACCCTCTTTTTGGAAAAGGGTGCTGTCATTATAGGATCTCAGGATCCATTTCACTGGGATGTTGTTGATCCCTTACCTTCTTATGGCCGAGGAGTTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTACATGATGTGGTCATAACAGGCAATAATGGAACTATTGATGGCATGGGATTGGCTTGGTGGGAATTGTTTAGCTCTCATTCCCTGAACTACAGCCGTCCTCATCTGATTGAATTAGTGGCATCTGATCATGTCGTAGTTTCAAATCTTACATTCTTGAATGCCCCTTCATATAGCATCCATCCAGTTTATTGCAGCAATGTACATATTCATAATATTTCAATCTCTGCTCCTCCAGAATCTCCTTATACTGTTGGCATAGTACCAGATTCTTCTGACCATGTTTGTATAGAGGATTGTATCGTTGCAACGGGCTATGATGCAATAGCCCTCAAAAGTGGGTGGGACGAATATGGCATTACCTATGGCAGGCCCACTGAGAATGTACACATCAGAAGGTTGCATCTGCGAGCTTCTTCTGGCTCAACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTCATCTTTACAACTCAGCTAGTGGCATTGAGTTCAGAACCACAAGGGGTAGAGGTGGTTATATGAAAGAAATCATGATATCAGACATAGAAATGGAGAATATCTACACGGCAATCACTGCCACAGGTCATTGTGGCTCTCATCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGACCACATTGTTTTGCAAAATATGAGTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCCTTCACAAACATATGCCTTTCCAACATAACTTTGTCTATAAATTCTGTTTCTTCCATTATTTGGGAATGCTCAAATGTCTTTGGATTTTCAGATTCTGTCCTTCCCAGACCCTGTGATGACCTTGAGACCCTTTCAGATTGTCTCTCCCCACTAATTATCAAGGGAAAAGATGCAATCCTGTGA 1344 0.4249 MLVALLLLLALSNEVRVNGDGRQCECSPTLKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYIKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDPFHWDVVDPLPSYGRGVEVPGGRYQSLINGYMLHDVVITGNNGTIDGMGLAWWELFSSHSLNYSRPHLIELVASDHVVVSNLTFLNAPSYSIHPVYCSNVHIHNISISAPPESPYTVGIVPDSSDHVCIEDCIVATGYDAIALKSGWDEYGITYGRPTENVHIRRLHLRASSGSTIAFGSDMSGGISNILVENVHLYNSASGIEFRTTRGRGGYMKEIMISDIEMENIYTAITATGHCGSHPDDKFDPNALPLLDHIVLQNMSGTNITIAGSFAGLQESPFTNICLSNITLSINSVSSIIWECSNVFGFSDSVLPRPCDDLETLSDCLSPLIIKGKDAIL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2272 447 Gene3D - 24 415 IPR012334 -
Apr9g2272 447 Pfam Glycosyl hydrolases family 28 134 413 IPR000743 GO:0004650|GO:0005975
Apr9g2272 447 PANTHER PECTIN LYASE-RELATED 2 436 - -
Apr9g2272 447 SMART pbh1 293 314 IPR006626 -
Apr9g2272 447 SMART pbh1 181 203 IPR006626 -
Apr9g2272 447 SMART pbh1 265 287 IPR006626 -
Apr9g2272 447 SMART pbh1 231 252 IPR006626 -
Apr9g2272 447 SMART pbh1 204 230 IPR006626 -
Apr9g2272 447 SUPERFAMILY Pectin lyase-like 27 427 IPR011050 -
Apr9g2272 447 Pfam Pectate lyase superfamily protein 37 94 IPR024535 -
Apr9g2272 447 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2272 Apr-Chr9 30485647 30488698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2272 3 434 Glycoside Hydrolase AT3G06770 63.927 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2272 - - gmx:100797678 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2272 9 30485647 30488698 Apr9g2272 9 30485647 30488698 ECH
Apr9g2272 9 30485647 30488698 Apr1g2115 1 30621627 30624723 PCT