Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2115 ATGCTTGTGGCATTGCTCTTGCTGTTGGCATTGAGCAATGCCGTGAGAGTTAATGGAGATGGTGGGCAATGTGGTTCCAATCCAACACTAGACCCAAGGCCACACAGTGTCTCCATTTTGGAGTTTGGCGCAGTTGGAGATGGTAAAACACTGAATACTATTGCATTCCAAAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTCCCTTCTGGAAGATGGCTCACTGGAAGTTTCAATCTTACTAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCACTGGGAAGTTGTTGAACCCTTACCTTCTTATGGCCGAGGGCTTGAAGTTCCAGGGGGAAGGTATCAGAGCTTGATAAATGGATATATGTTACATGATGTGGTCATAACAGGTAACAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCCCATTCCTTGAACCATAGCCGTCCTCATCTGGTTGAAATTGTAGCATCTGATTATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTACAGCATACACCCAGTTTATTGCAGCAATGTACATATACAAAATATTTCAATCTCTACTCCTCCTGAGTCCCCTTATACTGTTGGTATAGTACCAGATTCTTCTGATAAAGTTTGTATAGAAGATTGTATTGTTTCCATTGGATTTGATGCAATATCTCTCAAAAGTGGGTGGGATGAGTATGGGATTGCCTATGGCAGGCCCACAGAGAATGTACACATCAGAAGGGTGCATCTTCATGCATTTTCTGGCTCTGCTCTTGCATTTGGGAGTGACATGTCTGGTGGAGTTTCAGATGTTCTAGTGGAGCATGCTCATCTTTTCAATTCAAAGAGTGGCATTGAGTTCAGAACCACCAAAGGAAGAGGTGGTTACATGAAAGAAATTGTTATATCAGACATACAAATGGAGAATATCTACACGGCAATTGCTGCCACAGGTAATTGTGGTTCTCATCCTGATGACAAGTTTGATCCAAATGCACTACCACTTTTGGATCACATTACCTTGAAGGATGTTAGTGGCACAAACATCACCATTGCTGGAAGCTTTGATGGAATAGAAGAATCACCCTTCACTAACATATGCCTTTCCAATATAACCTTGTCTACAAATTCTGCTTCTCCTATTACTTGGGAATGCTCAAATGTATCTGGATTTTCAGACTCGGTGCTCCCAGAACCTTGTCCAGACCTTGGAAACCCCTCAAGTTCTTCCTCATCTTGTTTCTACCTGTTGAAGAGTATCAGTGGAAAAAGTGAAGTGCAGTGA 1359 0.4246 MLVALLLLLALSNAVRVNGDGGQCGSNPTLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWEVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVITGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSNVHIQNISISTPPESPYTVGIVPDSSDKVCIEDCIVSIGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGVSDVLVEHAHLFNSKSGIEFRTTKGRGGYMKEIVISDIQMENIYTAIAATGNCGSHPDDKFDPNALPLLDHITLKDVSGTNITIAGSFDGIEESPFTNICLSNITLSTNSASPITWECSNVSGFSDSVLPEPCPDLGNPSSSSSSCFYLLKSISGKSEVQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2115 452 SUPERFAMILY Pectin lyase-like 32 427 IPR011050 -
Apr1g2115 452 Gene3D - 26 419 IPR012334 -
Apr1g2115 452 Pfam Glycosyl hydrolases family 28 134 414 IPR000743 GO:0004650|GO:0005975
Apr1g2115 452 PANTHER PECTIN LYASE-RELATED 2 445 - -
Apr1g2115 452 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2115 Apr-Chr1 30621627 30624723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2115 3 428 Glycoside Hydrolase AT3G06770 65.046 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2115 - - gmx:100777503 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2115 1 30621627 30624723 Apr1g2115 1 30621627 30624723 ECH
Apr9g2272 9 30485647 30488698 Apr1g2115 1 30621627 30624723 PCT