Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2261 ATGGCCATTGCAAAGCGTGTTGCCATTCTTATTTTGTGCTTTGCATTGGCCTGTCATGTGGATGCAACTCCAAGGCCAAGGACAGTTGCTGGTCCTGATATCTTCAAGAATAAAAATGTCGCCAAGGATGTGCTCCTTCCTGGTGAGAAATTACTTAGCGTCATGAGTTTTGGAGCCAAACCTGATGGCGTGTTCGACAGCACTCAGGCTTTCATGAATACATGGAGAAAGGTGTGCCATGAATCGACAGAGCCAACGAGGTTTTACGTTCCTCCTGGCAGATTCTTGATTTCTCCTATAATTTTTCAAGGGCCATGCACTGTTCCAAGTCCAATAACATTTCAAGTAGAAGGGACTGTTTTGGCTACAGAGGATATTTCGGAGTTTGAAAACTCCGAATGGCTCATGTTCCAGAAACTCAATGGCTTGAAGATCATTGGTGGGGGCATCTTCGATGGCCAGGGTAAAAGTTCCTGGCAATACGCAGAGAATTGCGAATCAAGCGCTGACGACCAATGCGTTAGAAATCCTAGCAGCTTGTATTTCGAGGAGGTGTCCAACGTGGTTGTACAGAACATCAGATCAGTGAATCCCAAAGGCTTTCACATATTTGTTACCAAAAGTTCAAACGTGAGGTTACGTAAACTTAAGCTGGTGGCACCGGAAACCAGCCCCAACACTGATGGGATTCATATCAGCCTTTCCGACACTGTGATAATATCAAGAAATACCATAGCAACTGGGGATGATTGTATCTCTATGATTCAAGGAGTAAAAAATATTTTCATCAACAGACTCAAGTGTGGACCTGGACACGGTATTAGTATTGGTAGCCTTGGGAAGTATGAGGATGAGCAAGAGGTGAGAGGCGTTCGTATCAAGAACTGCTCATTGATTGGCACAACCAATGGCCTTAGAGTCAAAGCTTGGCCAGAAAAGTACCCAGGTGCAGCATCAGATATAAGCTTCAGTGACATTATCATGCAAAATGTTAAGAACCCCATCATCATTGACGAGGAGTATGAATGTTATCCAAACTGCAAAAAGAAGCCGTCACTTGTAAAGATCAACAATGTTCACTTTTCAAATATAAAGGGAACTACAATTTCACCAATTGCTGTGGACTTGAGGTGCAGCCAGCTGTTCCCATGCCAAGGTGTTACAGTGCAGGACATTGACCTCAAGCTTGGACTCGCCCCAACCTCCGCCAGATGTGTCAATACTAAACCTATATTTGGTGGCTTGCAAAATCCACCACCTTGCCCTTAG 1269 0.4437 MAIAKRVAILILCFALACHVDATPRPRTVAGPDIFKNKNVAKDVLLPGEKLLSVMSFGAKPDGVFDSTQAFMNTWRKVCHESTEPTRFYVPPGRFLISPIIFQGPCTVPSPITFQVEGTVLATEDISEFENSEWLMFQKLNGLKIIGGGIFDGQGKSSWQYAENCESSADDQCVRNPSSLYFEEVSNVVVQNIRSVNPKGFHIFVTKSSNVRLRKLKLVAPETSPNTDGIHISLSDTVIISRNTIATGDDCISMIQGVKNIFINRLKCGPGHGISIGSLGKYEDEQEVRGVRIKNCSLIGTTNGLRVKAWPEKYPGAASDISFSDIIMQNVKNPIIIDEEYECYPNCKKKPSLVKINNVHFSNIKGTTISPIAVDLRCSQLFPCQGVTVQDIDLKLGLAPTSARCVNTKPIFGGLQNPPPCP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2261 422 PANTHER - 2 421 - -
Apr9g2261 422 SUPERFAMILY Pectin lyase-like 49 421 IPR011050 -
Apr9g2261 422 SMART pbh1 318 339 IPR006626 -
Apr9g2261 422 SMART pbh1 235 256 IPR006626 -
Apr9g2261 422 SMART pbh1 185 205 IPR006626 -
Apr9g2261 422 SMART pbh1 288 309 IPR006626 -
Apr9g2261 422 SMART pbh1 208 234 IPR006626 -
Apr9g2261 422 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Apr9g2261 422 PANTHER POLYGALACTURONASE 2 421 - -
Apr9g2261 422 Gene3D - 46 416 IPR012334 -
Apr9g2261 422 Pfam Glycosyl hydrolases family 28 83 409 IPR000743 GO:0004650|GO:0005975
Apr9g2261 422 ProSitePatterns Polygalacturonase active site. 265 278 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2261 Apr-Chr9 30421459 30423260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2261 51 422 Glycoside Hydrolase AT1G02790 44.386 1.60e-106 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2261 K01213 - gmx:100800324 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2261 9 30421459 30423260 Apr9g2261 9 30421459 30423260 ECH
Apr9g2261 9 30421459 30423260 Apr1g2123 1 30713286 30716263 PCT