Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2123 ATGGACACTGTAAAGAGAATTGGTGTTCTAATGTTGTGCTTTGCATTGGCTTATTGTGTGGATGCTAAGGTAAGAGTAAGGCCAGTGGCTGGCCCTGATATCTACAGAGGTCACAATGCAGCTAAGGATGTCCTTGCTCCTGGTGAGAAAATAGTTAATGTCATGAGCTTTGGGGCCAAACCTGATGGCAAGTTTGATTGCACTCAGGCTTTTATGGACGGGTGGAGAGCAGCTTGCCAGTCCAAAGTGCAAGCCAGGCTTCTGATCCCTCCGGGCAGATTTGTGGTATCTTCAATGTTTTTTTCAGGGCCATGTTTGACTCCAGGGCCCATAACAATCCAAGTAGTAGGTACAGTTGTGGCTACAACAGATATCAGTGAGTATGAGAACAGTGAATGGCTCATGTTTCAGAACCTCGCAGGTTTAAAACTCATTGGTGGTGGTACTTTTGATGGGATGGGTAAGAGTTCATGGTCAAACTCTGAGAACTGTGAAGCAGACCCCACCGACACATGTGTCCGGGCACCTAGTAGCCTTTATTTCAGCAAAGTTACCAATGGAATCATACAGAACATCAAATCCGTAGACCCCAAAGGCTTTCACGTATTTGTCACAAACAGTGCAAACATCAGACTTCGATTACTTAAGCTCAAAGCACCGGCTACAAGCCCCAACACTGATGGCATTCATATTAGCAACTCCATCAATGTAAAAATATCCAAAAATAGTGTTGAAACTGGGGATGATTGTATTTCCATGATACAAGGAGTCAACAATATTACCATCAACAAGCTGAAATGTGGTCCTGGACATGGTATTAGTATTGGAAGTCTCGGAAAGTATGAGAATGAGCTAGAGGTGAAAGACATTCGTGTCAGCAACTGCACATTGGTTGGCACAACCAATGGCCTCAGAATCAAATCATGGCCAGATAAATATCCAGGTGCAGCTTCAGGTATCCACTTCAGTGACATTACCATGGAAAATGTGAAAAATCCAATCATCATTGACCAAGAGTATGAATGCGCTCCAAACTGTCAAAAGAAGCCTTCACTAGTAAAGGTCAGAAGTGTTAGTTTTTCAAATATAAGGGGAACCACAATTTCGCCAATAGCAGTGGATTTAAGGTGTAGCAAGCAATTCCCATGCCAAAATGTTCAACTTAACAACATAAACCTGAAGCTTGGACCCGCCCCTACAAACTCTAGATGTGCCAACATTAAACCTATATATGTAGGCTTGCAAGCACCACCAGCTTGTGCATAA 1266 0.4321 MDTVKRIGVLMLCFALAYCVDAKVRVRPVAGPDIYRGHNAAKDVLAPGEKIVNVMSFGAKPDGKFDCTQAFMDGWRAACQSKVQARLLIPPGRFVVSSMFFSGPCLTPGPITIQVVGTVVATTDISEYENSEWLMFQNLAGLKLIGGGTFDGMGKSSWSNSENCEADPTDTCVRAPSSLYFSKVTNGIIQNIKSVDPKGFHVFVTNSANIRLRLLKLKAPATSPNTDGIHISNSINVKISKNSVETGDDCISMIQGVNNITINKLKCGPGHGISIGSLGKYENELEVKDIRVSNCTLVGTTNGLRIKSWPDKYPGAASGIHFSDITMENVKNPIIIDQEYECAPNCQKKPSLVKVRSVSFSNIRGTTISPIAVDLRCSKQFPCQNVQLNNINLKLGPAPTNSRCANIKPIYVGLQAPPACA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2123 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Apr1g2123 421 Gene3D - 41 417 IPR012334 -
Apr1g2123 421 SMART pbh1 287 308 IPR006626 -
Apr1g2123 421 SMART pbh1 317 338 IPR006626 -
Apr1g2123 421 SMART pbh1 257 277 IPR006626 -
Apr1g2123 421 SMART pbh1 234 255 IPR006626 -
Apr1g2123 421 SMART pbh1 184 233 IPR006626 -
Apr1g2123 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Apr1g2123 421 PANTHER POLYGALACTURONASE 3 421 - -
Apr1g2123 421 PANTHER - 3 421 - -
Apr1g2123 421 SUPERFAMILY Pectin lyase-like 48 420 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2123 Apr-Chr1 30713286 30716263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2123 51 420 Glycoside Hydrolase AT4G18180 43.041 4.87e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2123 K01213 - gmx:106796220 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2123 1 30713286 30716263 Apr1g2123 1 30713286 30716263 ECH
Apr9g2261 9 30421459 30423260 Apr1g2123 1 30713286 30716263 PCT