Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2254 ATGCTTGCAGAGGAGAAATCTCAAAAGACATACCCGACAGTTGCCGAGGTATTGGACGAAGTAAAGAGAATGACAGACATAGGGTTGCCAATAGCAGCCATGAGCCTTGTGGGCTACATAAAAAACATGACCTTAGTTGTGTGCATGGGAAGGTTGGGAAGCATCGAGTTAGCTGGTGGTTCTTTGGCTATTGGCTTCACCAACATAACCGGTTACTCTGTCCTCTCAGGTCTAGCCATGGGCATGGAACCCCTATGCAGCCAGGCCATTGGTTTCCGAAACTTCTCCTTAGTCTCTCTCACTTTGCGCAGAACAATTTTCATGTTACTGCTATTTTCTCTCCCCATTTCTCTCTTGTGGCATAACCTCGAAACCTTCATGCTTTATCTTCACCAAAACCCTGACATAACCCAAGTAGCAAGCCTCTACTGTCGCTTCGCCATCCCAGACCTCATCGCTAATAGCTTCCTCCACCCTCTTCGTATCTATTTACGCAGTAAAGGAACAACCTGGCCACTGTTATGGTGCACGTTACTATCCATTCTTCTACACATTCCCATCATCACTATTTTAACTTTCAAACTTCACCTTGGTGTACCGGGAATTGCTATTTCATCTTTTGTCACCAATTTTAGCACCCTTTTTTTCCTTCTATTATACATTTTCTATACACGTGTCCCCAAGGAGTCTTTATATGTGCCATTATTAACACCTCGTCCCCTGTCACGAAATTTAATAACAAGTAACACTATTGCTTCGGTAGGCAAAGAATGGGGTGTGCTAATGAAATTGTCAATACAAAGTTGTCTAGCTGTTTGCTTGGAATGGTGGTGGTATGAATTCATGACAATTTCAGCAGGTTACCTTTATAACCCTCGTGTTGCTCTAGCCACGGCTGGCATAGTGATACAAACAACCTCTCTTATGTACACTTTGCCAGCAGCACTGAGTGCATCAGTGTCCACAAGAGTAGGCAATGAACTCGGGGCGGGGCAAGGTGAAAGGGCAAGGTTGTCAACAGTGGTAGCCATAGGATTAGCACTTGCAGGCTCAACTTTGGGTTTGTTGTGGACCACGGTGGGAAGGGAAAGGTGGGGGAGAGTGTTCACCAATGATAGTGAGGTGCTACAATTGACCATGGCTGTGTTACCCATAATTGGACTTTGTGAGCTAGCCAATTGTCCACAAACCACAAGCTGTGGAATCCTTAGAGGAAGTGCTAGGCCTGGTGTTGGTGCTGTTATAAATTTTTGTTCATTTTACTTGGTGGGAGCACCAGTGGCAATAGTCTTGGCCTTCGTTTGGAAACTAGGAATGGTGGGTTTGTGTTATGGGTTGCTGGCAGCGCAGATCGCATGTGTGGTGTCAATTTTTGTTGTTGTATACAAGACTGATTGGGAAAGAGAGTCGTTGAAAGCCAGAAGCTTGGTGGGAAAGAGTTCATGCGGCACATTTCCACATGCTGACCAAATTACAATGTGTGAAGAAGGTTTTGTCTTTCTCAAAGAGAACAACTCCGAAAAGTGA 1527 0.4492 MLAEEKSQKTYPTVAEVLDEVKRMTDIGLPIAAMSLVGYIKNMTLVVCMGRLGSIELAGGSLAIGFTNITGYSVLSGLAMGMEPLCSQAIGFRNFSLVSLTLRRTIFMLLLFSLPISLLWHNLETFMLYLHQNPDITQVASLYCRFAIPDLIANSFLHPLRIYLRSKGTTWPLLWCTLLSILLHIPIITILTFKLHLGVPGIAISSFVTNFSTLFFLLLYIFYTRVPKESLYVPLLTPRPLSRNLITSNTIASVGKEWGVLMKLSIQSCLAVCLEWWWYEFMTISAGYLYNPRVALATAGIVIQTTSLMYTLPAALSASVSTRVGNELGAGQGERARLSTVVAIGLALAGSTLGLLWTTVGRERWGRVFTNDSEVLQLTMAVLPIIGLCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLAAQIACVVSIFVVVYKTDWERESLKARSLVGKSSCGTFPHADQITMCEEGFVFLKENNSEK* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2254 508 PANTHER PROTEIN DETOXIFICATION 55 12 482 - -
Apr9g2254 508 CDD MATE_eukaryotic 20 472 IPR045069 GO:0042910|GO:1990961
Apr9g2254 508 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr9g2254 508 Pfam MatE 268 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr9g2254 508 TIGRFAM matE: MATE efflux family protein 30 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr9g2254 508 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2254 Apr-Chr9 30384224 30385904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2254 K03327 - gmx:100801932 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2254 9 30384224 30385904 Apr9g2254 9 30384224 30385904 ECH
Apr9g2254 9 30384224 30385904 Apr1g2132 1 30846348 30848520 PCT