Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1819 ATGTTAGAAAAAGTTTGGTTCTTGAAACACTTGCAGCACTGTTTCTCATTCTGCTCTTTGATGGGATTTTCTTGCAGTGACAAGATAAGAGCTATGGATATTTCAGACTACACAAGGATTGTCTTTGATAAAATTCAGAAAATTGAGCCGGAGCATGCTACAAAGATAATTGGCTACCTCCTTTTGCAAGACAATGGGGAGCAAGAAATGGCTAAATTGGCTTCATGCCCCGATCATTTCATCCGTGAAGTGGCATTTAAGGCCAAAAATGATCTTCAAAGGTTGGCTGCTACACCAGCTATGCTCTCAATTTCACCCACTGTCAACCCTCCACAAGGTTTAAGCCATTTATCAGTAATCTCCCCTAGGACTCCTACTTCACCACCAAGCTTCCAGGTTCCCTCTCCCTATTGGGATCCTCACTCTGCTACCAATACCAATCCAGACTTTATGGGAATTAATTACTTGGATTCTATAGCAGAACTTCAGAAGCAGACACAGTTGTTCGGTTTGGAGAATCATATGGATCCTGTTAATACTGGAACTGGAGGGATTGTCAATGATTTCTATGGCTTAGATGCTTCTGCAGCCAATTTGAGTGGAAAATCTGGTAGAAGGTTTTCTGAATTTCCATTCAAGGTCTGTCACTATTTCAACAAAGGATTCTGTAAGCATGGAGCAAACTGTAAATTCTATCATGGGCAAGTTCCTGATGAGGACCAGGTGGTTTCTCCAGGTTCACTAGCACAGTTAGAGTTGGAAATTATTGAGCTCCTAAAATCAAGAAGCACTCCAATGTCAATTGCTTCCCTGCCAATGGCATACTATGATAAATATAAAAAGGTCCTGCAAGCAGATGGTTATTTAACTGAGAGTCAGAGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCTCGACTGAAAAATAGTATTCGGCTAATAGACAGACCTCATGGGCAGCATGCTGTGGTGCTGGCCGAAGATGCAGCGGCTCCCACATATCTGCAAAGGGGAGAGTTTGCTCGACATATAAGTGCATCACGACAAATATATTTGACATTTCCTGCTGAAAGCACTTTCACAGAGGATGATGTGTCAGATTACTTCAACACATTTGGGGAAGTTGAAGATGTTAGGATTCCAAACCAGTCCAAAAGGATGTTTGGATTTGTGACATTTGTTGATCCAGAAACTGTCAAAACTATTTTGGGCAAGGGGAATCCCCATTATGTTCATGGGTCTCGGGTGCTTGTGAAACCATACCGGGAGAAAGGAAAGGTTAATGAAAGGAAGTGCACCGATAGAACTGAGCTCCATATTTGTTCACCGCACTATTTAGATACGGACTTTGAACATAACTCAATTCTGAGAAGTTGTGGGAACCATAGATCCATAAGGAGACAGCTGATTGAAGAGCAGGATCAAGCCCTGCGAATTCAGAGAAGACAGCTTGCACAGCTTCAGTTTGCTCAAAAACCTTTCACCAGTTCACCTCGTTTTGGCTTCTCTGTGGATGAGCCAAGAGTTTTAGATGATCATTTCAATTTCCAGCAAGCAGAAGAATCTTTCAGTTATCTACAGGATGACAAACCTAGACTATTAGACACCAATTTCTCTGATGAGAACAGCAATCAAGCACTCAATCTCCCAGACAGTCCATTTGCATTTCCAATATAA 1683 0.4183 MLEKVWFLKHLQHCFSFCSLMGFSCSDKIRAMDISDYTRIVFDKIQKIEPEHATKIIGYLLLQDNGEQEMAKLASCPDHFIREVAFKAKNDLQRLAATPAMLSISPTVNPPQGLSHLSVISPRTPTSPPSFQVPSPYWDPHSATNTNPDFMGINYLDSIAELQKQTQLFGLENHMDPVNTGTGGIVNDFYGLDASAANLSGKSGRRFSEFPFKVCHYFNKGFCKHGANCKFYHGQVPDEDQVVSPGSLAQLELEIIELLKSRSTPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAAAPTYLQRGEFARHISASRQIYLTFPAESTFTEDDVSDYFNTFGEVEDVRIPNQSKRMFGFVTFVDPETVKTILGKGNPHYVHGSRVLVKPYREKGKVNERKCTDRTELHICSPHYLDTDFEHNSILRSCGNHRSIRRQLIEEQDQALRIQRRQLAQLQFAQKPFTSSPRFGFSVDEPRVLDDHFNFQQAEESFSYLQDDKPRLLDTNFSDENSNQALNLPDSPFAFPI* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1819 560 Gene3D - 351 430 IPR012677 -
Apr9g1819 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 361 415 IPR000504 GO:0003723
Apr9g1819 560 SMART c3hfinal6 211 235 IPR000571 GO:0046872
Apr9g1819 560 ProSiteProfiles Zinc finger C3H1-type profile. 209 236 IPR000571 GO:0046872
Apr9g1819 560 CDD RRM_AtC3H46_like 352 421 IPR034365 -
Apr9g1819 560 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 235 IPR000571 GO:0046872
Apr9g1819 560 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 32 560 - -
Apr9g1819 560 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 32 560 - -
Apr9g1819 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 425 IPR000504 GO:0003723
Apr9g1819 560 Gene3D - 208 282 - -
Apr9g1819 560 SUPERFAMILY RNA-binding domain, RBD 361 431 IPR035979 GO:0003676
Apr9g1819 560 ProSiteProfiles OST-type HTH domain profile. 247 330 IPR025605 -
Apr9g1819 560 Pfam OST-HTH/LOTUS domain 247 324 IPR025605 -
Apr9g1819 560 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Apr9g1819 560 SMART rrm1_1 351 421 IPR000504 GO:0003723
Apr9g1819 560 SUPERFAMILY CCCH zinc finger 212 234 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1819 Apr-Chr9 27039096 27044461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1819 - - gmx:100818984 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1819 9 27039096 27044461 Apr9g1819 9 27039096 27044461 ECH
Apr2g0272 2 3310630 3315186 Apr9g1819 9 27039096 27044461 PCT