Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0272 ATGGTCGTTGGAACTTCTTGCAGTGACAAGATAAAAGCTATGGATATATCACAGTACACTAGGATTGTTTTTGAGAAACTTCAGAGATTTGAGCCAGAGTATGCTACAAAGATCATTGGATATCTCCTTCTGCAAGATCATGGTGAGGAAGACATGGTTAAATTGGCATCATTCCCAGACCATTTAATCCGCGAGGTGGCGCTTAAGGCCCGGACCGAGCTTCAAAGGTTGGCTGCTAAATCAGCCATTCATCCAATTTCACTTCCAATCAACTCTCAACAAGATTTAAGCCCTTTGTCATCAATCTTCTCTAGCACTCCTACTTCTGCAGCAAGCTTCCACGTTCAATCTCCCTACTGGGATACTCTGTCTACTAGTAATACCAATTCTGAATTTATGCCATTAAGTTTCTTGGATTCTATCTCAGAATTTCAAAAGCAGACCCCATTTTTCTGTTTAGAGAATCAAATGGAAACTGTAAATTCTGGGACTGTTGGATTTGTCAATGATTGCTTTGGATTAGATGCTCCATCAGGTGGTAATATGGGTTCAAAACCTGGTAGAAGGTTTGAATTACCAGTTAAGACCTGTCACTATTTCAACAAAGGATTTTGTAAGCATGGAAATAGCTGCAGATACTATCATGGACAAGTTGTTCCTGACATATTCTCTCAGATGTATGGAAATGATGGTCTTAATGATGATCAGGTGATTTCACCAGGGTCACTAGCACAGTTAGAGTCAGAAATCGTTGAGCTCCTAAAACTAAGAAAAGGCAACCCCATGTCAATTGCTTCCCTTCCAATGGCATACTATGATAAGTATAAAAAGGTGCTGCAGGCAGAAGGTTACCTAACTGAGAGCCAGAGGCATGGCAAGTCTGGCTACAGCTTGACAAAGCTTCTTGCGCGGTTGAAAAATAGTATTCGGCTAATTGGCAGGCCTCATGGGCAGCATTCAGTGGTTCTGGCAGAAGATGCTCCAAAGTGCAAGGGAAAGTTAGATTTTGGTCAGTACATTAGTGCATCGCGACAAATATATCTGACATTTCCAGCTGACAGCACTTTCACTGAGGATGATGTTGCAAACTACTTCAGCACTTTTGGGGATGTTGAAGATGTAAGGATTCCAAGCCAACAGAGAAGGATGTTTGGATTTGTGACATTTGTTAATTCTGAAACTGTTGAAATGATTTTGGCCAAGGGAAATCCACATTATGTTCGTGGATCTCGAGTTCTTGTGAAACCTTACAAGGAGAAGTCAAAACTTATGGACAAGAAGCACCAAGATAGAATGGAGCAATCTGTTAGTTATTCAACACACTATGTAGACATTGACTCTGAACCTACTTCAATCTCAAGAAGTTGCAGAAACTCTAGATTTCTTAAGAGGCTATTTGAACAGCAAGAGGAGGCCCTTGAATTTCAGAGAAGGCATCTTGCAGAACTGCAACTGGCCCAAAACTCCGTTTCCAATCCACCGCACATAGACTTCAACATGAATAGATTACAAGTTTCTGATGATCATTTCAATGTCCAGTCTGCGGAATCTTTCTTTCATTCGAATGTCCAGTCTGCAGAATCTTTCTTTCATATTCCAAATGACAAAGCGGGGTTTACAAATGCCAATTACACTGACAATGACAGAAACCAAGGACTGAATCTCCCGGACAGCCCATTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTCATATAA 1719 0.4095 MVVGTSCSDKIKAMDISQYTRIVFEKLQRFEPEYATKIIGYLLLQDHGEEDMVKLASFPDHLIREVALKARTELQRLAAKSAIHPISLPINSQQDLSPLSSIFSSTPTSAASFHVQSPYWDTLSTSNTNSEFMPLSFLDSISEFQKQTPFFCLENQMETVNSGTVGFVNDCFGLDAPSGGNMGSKPGRRFELPVKTCHYFNKGFCKHGNSCRYYHGQVVPDIFSQMYGNDGLNDDQVISPGSLAQLESEIVELLKLRKGNPMSIASLPMAYYDKYKKVLQAEGYLTESQRHGKSGYSLTKLLARLKNSIRLIGRPHGQHSVVLAEDAPKCKGKLDFGQYISASRQIYLTFPADSTFTEDDVANYFSTFGDVEDVRIPSQQRRMFGFVTFVNSETVEMILAKGNPHYVRGSRVLVKPYKEKSKLMDKKHQDRMEQSVSYSTHYVDIDSEPTSISRSCRNSRFLKRLFEQQEEALEFQRRHLAELQLAQNSVSNPPHIDFNMNRLQVSDDHFNVQSAESFFHSNVQSAESFFHIPNDKAGFTNANYTDNDRNQGLNLPDSPFAFPVDSGISAVI* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0272 572 CDD RRM_AtC3H46_like 346 415 IPR034365 -
Apr2g0272 572 ProSiteProfiles OST-type HTH domain profile. 242 325 IPR025605 -
Apr2g0272 572 SMART rrm1_1 345 415 IPR000504 GO:0003723
Apr2g0272 572 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 14 572 - -
Apr2g0272 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 411 IPR000504 GO:0003723
Apr2g0272 572 Gene3D - 347 423 IPR012677 -
Apr2g0272 572 SUPERFAMILY CCCH zinc finger 193 216 IPR036855 GO:0046872
Apr2g0272 572 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 14 572 - -
Apr2g0272 572 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Apr2g0272 572 Pfam OST-HTH/LOTUS domain 242 321 IPR025605 -
Apr2g0272 572 SUPERFAMILY RNA-binding domain, RBD 355 439 IPR035979 GO:0003676
Apr2g0272 572 Gene3D - 187 227 - -
Apr2g0272 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 419 IPR000504 GO:0003723
Apr2g0272 572 Coils Coil 466 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0272 Apr-Chr2 3310630 3315186 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0272 - - gmx:100806206 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0272 2 3310630 3315186 Apr2g0272 2 3310630 3315186 ECH
Apr2g0272 2 3310630 3315186 Apr9g1819 9 27039096 27044461 PCT