Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1787 ATGGCACCCTCAGTTTTTTTCCTTCTTTTGTTCCTTCTGTTCATTCCAATCACTGCCAGTGGTGATCTCCAACATCATGAAGAGGGTTTCATCTCTTTGGTCATCTCTGATAAGGGCCTCGATTTTGCCAAGGATTTTGTGATAGAGCAGGCTATTGCCTCTATTGTTCACTCTCAACTGCCACCAATTGAGAAATCTGTCCAAGTCCCACTTATTGGAAAGGCCAAAGTGGTTCTTTCTGAGATCACAATCAATGATATCCAAGTAAATTCTTCATCTGTTAAAACAGGAGAAACAGGCATTGCTCTAGTTGTTTCAGGTGCCACTGTCAATTTGAGTTTGAAGTGGAGGTACACTTGCAGCAGTTGGTTAGTCCCAATTGGAATTTCGGATAGTGGGACCGCCACTGTGAAGGTTAAAGATTTGCAAGTGGGACTTACTGTAAATTTAAGGAACCAAGAAGGAAGTCTTAAGTTGATTCTCCTGGATTATGGATGTCATGTTGGAGATATATATATAAAGTTGAACGGTGGAGCAGCTTGGCTTTACCAAGTGCTAGTGGATGCTTTTGAAGGAAATATAGCATCTTCAGTTGAAGAGGCAATTTCTGAGAAAATAAAAGAGGGGATAGCAACACTTGAATACTTACTGCAATCTCTTCCGAGGACAATCTCTTTAGATGAAACTGCTGTTCTAAATATTTCTTTTGTGGACGATCCTGTGCTGAGTGATTCTTCTATTGAATTTGAACTTAATGGTTTATTCACAGCAAGAAATGAAGTTTTAGTAACTCAACGTCATCGCAGAGGATCATGTGGTGGAAGTTCACCAAAGATGATAAAGATTTCATTACATGAAAGTGTTTTCAAATCTGGTTCCTTGGTTTACTTCTCTGCAGATAGTATGCAATGGATTGTTGATGAACTACCTGATCAGGCCCTTTTGAACACTGCTGAATGGAGATTCCTTATTCCTCAATTATTCAAGCAATATCCAAATGATGACATGAATCTTTTTATCTATGTATCTTCTCCACCGATTATACAAGTGACGAACAAAGATATCGGTGTAACCCTTTCCATAGATATAATAATCAATGTTCTTGAAGCCAGTGAAGTCATACCTGTTGCATGCATCTCAGTGGATTTTAGTGCCTCATGTGCTGCAGAAATTGTAGGAAACAATCTTGCTGGTTGGCTTAAGTTAAGAAAGTTTTCCACATACTTGAAATGGAGCAAAATAGGGAAGCTACACATGCATCTTATTCAGTCAGTGACATCAAGTGTCCTCAAAACTGTCCTCATACCATACCTCAACTCACAGTTAAAGAGGGGAATTCCATTGCCAATTCTTAACGGTTTTGCTCTTGATAGTGCTCATATATTGTACACTCCACCGTGGATTACAGTGTGTAGTGATGTTTCCTTCTTAGGAGACTACTACCTCAAACAGCTACCTGCTTATGCTTATGCATCATAA 1479 0.3922 MAPSVFFLLLFLLFIPITASGDLQHHEEGFISLVISDKGLDFAKDFVIEQAIASIVHSQLPPIEKSVQVPLIGKAKVVLSEITINDIQVNSSSVKTGETGIALVVSGATVNLSLKWRYTCSSWLVPIGISDSGTATVKVKDLQVGLTVNLRNQEGSLKLILLDYGCHVGDIYIKLNGGAAWLYQVLVDAFEGNIASSVEEAISEKIKEGIATLEYLLQSLPRTISLDETAVLNISFVDDPVLSDSSIEFELNGLFTARNEVLVTQRHRRGSCGGSSPKMIKISLHESVFKSGSLVYFSADSMQWIVDELPDQALLNTAEWRFLIPQLFKQYPNDDMNLFIYVSSPPIIQVTNKDIGVTLSIDIIINVLEASEVIPVACISVDFSASCAAEIVGNNLAGWLKLRKFSTYLKWSKIGKLHMHLIQSVTSSVLKTVLIPYLNSQLKRGIPLPILNGFALDSAHILYTPPWITVCSDVSFLGDYYLKQLPAYAYAS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1787 492 Pfam LBP / BPI / CETP family, N-terminal domain 39 212 IPR017942 GO:0008289
Apr9g1787 492 Gene3D - 33 461 - -
Apr9g1787 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 476 IPR017943 GO:0008289
Apr9g1787 492 Pfam LBP / BPI / CETP family, C-terminal domain 275 463 IPR001124 GO:0008289
Apr9g1787 492 Gene3D - 38 218 - -
Apr9g1787 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 35 243 IPR017943 GO:0008289
Apr9g1787 492 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 488 - -
Apr9g1787 492 SMART bpi1_3 35 260 IPR017942 GO:0008289
Apr9g1787 492 PIRSF Lipid_binding_protein 5 480 IPR030675 GO:0005615|GO:0008289
Apr9g1787 492 PANTHER OS06G0309200 PROTEIN 1 488 IPR045897 -
Apr9g1787 492 SMART bpi2_2 274 479 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1787 Apr-Chr9 26849411 26853053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1787 K05399 - gmx:100804747 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1787 9 26849411 26853053 Apr9g1787 9 26849411 26853053 ECH
Apr2g0237 2 2983517 2988849 Apr9g1787 9 26849411 26853053 PCT