Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1423 ATGTCCAAACAGACTTACAGTGTGTGCTTCTGTTGGCGCCGCCGGTTCAAACTGGCCCTGTCGGAGGCTCCACCGGAGATCAAGAACCTTTTCGAACAGTACTCTGAGAATGAGTTGATGACTGCTTCTCACCTTCGAAGGTTCTTAGTTGAAGTGCAGAGACAAGAGAAGGCCACTGAAGAGGAAGCACAAGCCATCATCGATAGCTCCAAGCATTTCCATCGTAGAGGTGCTGGCTTAAATCTCGAATCTTTCTTCAAGTACCTCTTCAGTGACAGTAACCCACCTCTCCCACCTTCTCTTGGGGTGCACCAGGATATGACTTTACCCTTATCACATTATTTCATATACACTGGCCATAATTCCTATCTAACTGGGAATCAGCTCAGCAGCGACTGCAGTGATGTCCCTATTATAAATGCACTGAAGAGAGGTGTGAGGGTGATTGAATTGGACATATGGCCTAATGCATCAAAGGATAATATAGATGTTCTTCACGGAAGGACATTGACAACTCCTGTAGAGCTCATTAGATGTTTGAGGTCTATTAAGGAACATGCCTTTGTGACATCAGAATATCCAGTTGTAATAACCCTAGAAGACCATCTTACTCCTGATCTTCAGGCTAAAGTGGCTGGGATGGTTACTCAAACATTTGGAGACATACTATTTACTCCTAGCTCAGAAAGCTTGAAGGAATTCCATTCTCCTGAATCGCTTAAAAAGAGGATTATTATATCAACCAAACCACCTAAAGAGTACCTTGAGACGAAAGAAAAGGAAAAAGGGGATGAGTCACAGCAGGGAAAGGCAACAAGCGAGGATGAAGCTTGGGGGAAGGAAGTCCCAAGCTTAAAAGGTGGTACTATGGCTGATTACAAGGATAACAGTACGGAGGAGGATCTTAATGATGAGGAAGAGTTTGATGAATCTGATAAGTCACATCATAATGAAGCTTCTGAATATAGATCTCTAATTGCCATTCATGCTGGAAAGCCCAAAGGTGGATTAGCAGAATGCCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGCTATAAATCATGCAAAAGATATTGTCAGGTTTACTCAGCGGAATATACTGAGGGTGTACCCAAAAGGTACTCGCATTGACTCATCCAACTATAACCCATTAATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGATATGGGAGATCACTTTGGTTGATGCATGGAATGTTCAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTTTCTATTAAAGACTGGTCCGAATAATGAGGTTTTCGATCCTAAAGTCAAGTTACCCGTGAAGACTACTTTGAAGGTGACTGTGTACATGGGAGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAGTACTCACCACCAGACTTCTACACGAGAGTGGGAATTGCTGGAGTCCCCAGTGATACTATAATGAAGAAAACTAAACCAATAGAGGATAACTGGTCACCTACATGGAATGAGGTATATGAGTTCCCACTTACTGTTCCAGAATTGGCCTTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAAAAGGATGATTTTGGTGGACAAACATGTTTACCTGTTTGGGAGCTAAGAAGTGGCATTCGAGCAATTCCACTGCATAGCCAAAAGGGAGAGAAATACAACACTGTGAAGCTTCTTATGCGCTTTGAATTTTGTTGA 1764 0.4246 MSKQTYSVCFCWRRRFKLALSEAPPEIKNLFEQYSENELMTASHLRRFLVEVQRQEKATEEEAQAIIDSSKHFHRRGAGLNLESFFKYLFSDSNPPLPPSLGVHQDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNASKDNIDVLHGRTLTTPVELIRCLRSIKEHAFVTSEYPVVITLEDHLTPDLQAKVAGMVTQTFGDILFTPSSESLKEFHSPESLKKRIIISTKPPKEYLETKEKEKGDESQQGKATSEDEAWGKEVPSLKGGTMADYKDNSTEEDLNDEEEFDESDKSHHNEASEYRSLIAIHAGKPKGGLAECLKVDPDKVRRLSLSEQQLEKAAINHAKDIVRFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLKTGPNNEVFDPKVKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPSDTIMKKTKPIEDNWSPTWNEVYEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAIPLHSQKGEKYNTVKLLMRFEFC* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1423 587 Gene3D - 22 100 - -
Apr9g1423 587 Gene3D C2 domain 452 587 IPR035892 -
Apr9g1423 587 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 351 437 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr9g1423 587 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 92 IPR015359 -
Apr9g1423 587 Pfam C2 domain 460 560 IPR000008 -
Apr9g1423 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Apr9g1423 587 ProSiteProfiles C2 domain profile. 440 569 IPR000008 -
Apr9g1423 587 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 586 - -
Apr9g1423 587 SMART plcx_3 105 249 IPR000909 -
Apr9g1423 587 MobiDBLite consensus disorder prediction 252 317 - -
Apr9g1423 587 CDD C2_PLC_like 457 586 - -
Apr9g1423 587 SMART C2_3c 459 567 IPR000008 -
Apr9g1423 587 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Apr9g1423 587 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 451 IPR017946 GO:0006629|GO:0008081
Apr9g1423 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 459 586 IPR035892 -
Apr9g1423 587 MobiDBLite consensus disorder prediction 252 281 - -
Apr9g1423 587 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Apr9g1423 587 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Apr9g1423 587 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Apr9g1423 587 PRINTS Phospholipase C signature 377 398 IPR001192 GO:0035556
Apr9g1423 587 PRINTS Phospholipase C signature 398 416 IPR001192 GO:0035556
Apr9g1423 587 PRINTS Phospholipase C signature 553 563 IPR001192 GO:0035556
Apr9g1423 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 352 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr9g1423 587 SUPERFAMILY PLC-like phosphodiesterases 105 440 IPR017946 GO:0006629|GO:0008081
Apr9g1423 587 CDD PI-PLCc_plant 104 426 - -
Apr9g1423 587 SUPERFAMILY EF-hand 16 107 IPR011992 -
Apr9g1423 587 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 586 IPR001192 GO:0035556
Apr9g1423 587 SMART plcy_3 322 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1423 Apr-Chr9 23852314 23856753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1423 1 586 Acyl Lipid Metabolism Gene Families AT3G55940 69.374 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1423 K05857 - gmx:100037460 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1423 9 23852314 23856753 Apr10g2115 10 33817765 33823808 ECH
Apr9g1423 9 23852314 23856753 Apr9g1423 9 23852314 23856753 ECH
Apr10g2115 10 33817765 33823808 Apr9g1423 9 23852314 23856753 PCT