Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2115 ATGTCGAAACAGACTTACAACGTTTGCTTCTGTTGCCGGCGGCGCTTCAAGCTCTCCGTGTCAGAGGCTCCGCCGGAGATAAGGACTCTTTTCGAACGTTACTCCGATGAGAATGGGGTGATGACAGCGACTCACCTGCGGAGTTTCCTTGTTGAGGTGCAGAGGGAAGAGAGGAGCACTGAGGAGGAAGCACAAGGCATCATCGATGGCCACAAGCATTTGAGTATCTTCCACCGAAGAGGTCTCAATCTCGAGAGTTTCTTTAACTATCTCTTCAGTCAAAACAACTCACCTCTCTCACCTTCTCAAGTGGTGCACCAAGATATGACTTTTCCATTGTCTCACTACTACATTTATACTGGTCACAATTCATATCTAACTGGGAATCAGCTTAGCAGTGACTGCAGTGACGCCCCCATCATCAGTGCACTGGAGAGAGGTGTCAGGGTGATTGAATTAGATATATGGCCTAATGCATCAAAGGATAATGTGGATGTTCTTCATGGAAGGACTTTGACTTCTCCAGTAGCACTCATCAAATGTTTGAGGTCAATTAAGCAGCATGCCTTTGTAGCCTCAGAATATCCAGTTGTAATAACCTTAGAAGACCACCTTACCCCTGATCTTCAGGCCAAAGTGGCTGAGATGATTACTCGAACATTTGGAGACATACTGTTTTGTCCTAGCTCAGAAAGCTTGAAGGAATTTCCTTCTCCTGAATCACTTAAAAGGAGGATTATTATATCAACAAAACCACCTAAGGAGTACCTTGAGGCAAAAGAAGTGCAGCAAAAGGAGGAGGAAACACAGAAAGGAAAGCATACAGATGATGAAGAAGCATGGGGGAGGGAAGTCCCAAGTTTAAGAGGTGGAACTATCTCTGATTACAAGAACAATGGGGATGAAGATGAACTTGATAATGAGGAAGATACTGATGAATTAGAAAATAAGCGTCAAAATGCATCACAAGAATACAGACGTTTGATTGCCATTCATGCCGGGAAGCCTAAAGGTGGGTTAGAGGAATGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGCTACAGCTTGAAAAGGCTGCTGAAACTCATGGAAAAGAAATTGTCAGATTTACTCAGCGGAATATACTTAGAGTGTATCCCAAAGGTACTCGCATTACCTCTACAAATTATAACCCATTGATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGGAGATCTCTTTGGTTGATGCATGGAATGTTCAAAGCCAATGGCGGATGCGGTTATGTTAAAAAACCAGATTTTCTATTAAAGGCAGGTCCGAATAATGAAGTCTTTGATCCTAAAGCTCATTTGCCTGTCAAGACTACTTTAAAGGTAACCATATACATGGGTGAAGGATGGTATCAGGATTTCAAGCACACCCACTTTGATCAATTCTCACCACCAGACTTCTACACAAGAGTGGGCATTGCTGGAGTCCCTAGTGATACAATTATGAAAAAAACAAGGAGTATAGAGGATAATTGGTTGCCTTCATGGAATGAGGTATTCGAGTTCCCACTTGCTGTTCCAGAATTGGCTTTGCTTCGTATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGACAAACATGCTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCAGTTCCACTACGTTCCCGCAAAGGAGAAAAATACAACAATGTGAAGCTTCTCGTGCGCTTTGAATTCATTTGA 1773 0.4298 MSKQTYNVCFCCRRRFKLSVSEAPPEIRTLFERYSDENGVMTATHLRSFLVEVQREERSTEEEAQGIIDGHKHLSIFHRRGLNLESFFNYLFSQNNSPLSPSQVVHQDMTFPLSHYYIYTGHNSYLTGNQLSSDCSDAPIISALERGVRVIELDIWPNASKDNVDVLHGRTLTSPVALIKCLRSIKQHAFVASEYPVVITLEDHLTPDLQAKVAEMITRTFGDILFCPSSESLKEFPSPESLKRRIIISTKPPKEYLEAKEVQQKEEETQKGKHTDDEEAWGREVPSLRGGTISDYKNNGDEDELDNEEDTDELENKRQNASQEYRRLIAIHAGKPKGGLEECLKVDPDKVRRLSLSELQLEKAAETHGKEIVRFTQRNILRVYPKGTRITSTNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFKANGGCGYVKKPDFLLKAGPNNEVFDPKAHLPVKTTLKVTIYMGEGWYQDFKHTHFDQFSPPDFYTRVGIAGVPSDTIMKKTRSIEDNWLPSWNEVFEFPLAVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLRSRKGEKYNNVKLLVRFEFI* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2115 590 Pfam C2 domain 462 563 IPR000008 -
Apr10g2115 590 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 97 IPR015359 -
Apr10g2115 590 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 462 589 IPR035892 -
Apr10g2115 590 MobiDBLite consensus disorder prediction 260 319 - -
Apr10g2115 590 SMART plcy_3 325 442 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr10g2115 590 Coils Coil 304 331 - -
Apr10g2115 590 SUPERFAMILY PLC-like phosphodiesterases 107 443 IPR017946 GO:0006629|GO:0008081
Apr10g2115 590 Gene3D - 22 103 - -
Apr10g2115 590 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 590 - -
Apr10g2115 590 Pfam Phosphatidylinositol-specific phospholipase C, X domain 109 251 IPR000909 -
Apr10g2115 590 Gene3D Phosphatidylinositol (PI) phosphodiesterase 104 455 IPR017946 GO:0006629|GO:0008081
Apr10g2115 590 SMART C2_3c 462 570 IPR000008 -
Apr10g2115 590 ProSiteProfiles C2 domain profile. 443 572 IPR000008 -
Apr10g2115 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 107 251 - -
Apr10g2115 590 SMART plcx_3 107 251 IPR000909 -
Apr10g2115 590 CDD C2_PLC_like 460 589 - -
Apr10g2115 590 MobiDBLite consensus disorder prediction 260 284 - -
Apr10g2115 590 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr10g2115 590 Gene3D C2 domain 457 590 IPR035892 -
Apr10g2115 590 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 590 IPR001192 GO:0035556
Apr10g2115 590 SUPERFAMILY EF-hand 16 107 IPR011992 -
Apr10g2115 590 CDD PI-PLCc_plant 106 429 - -
Apr10g2115 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 355 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr10g2115 590 PRINTS Phospholipase C signature 112 130 IPR001192 GO:0035556
Apr10g2115 590 PRINTS Phospholipase C signature 138 158 IPR001192 GO:0035556
Apr10g2115 590 PRINTS Phospholipase C signature 235 252 IPR001192 GO:0035556
Apr10g2115 590 PRINTS Phospholipase C signature 380 401 IPR001192 GO:0035556
Apr10g2115 590 PRINTS Phospholipase C signature 401 419 IPR001192 GO:0035556
Apr10g2115 590 PRINTS Phospholipase C signature 556 566 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2115 Apr-Chr10 33817765 33823808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2115 1 590 Acyl Lipid Metabolism Gene Families AT3G55940 68.571 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2115 K05857 - gmx:100784534 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1423 9 23852314 23856753 Apr10g2115 10 33817765 33823808 ECH
Apr10g2115 10 33817765 33823808 Apr10g2115 10 33817765 33823808 ECH
Apr10g2115 10 33817765 33823808 Apr9g1423 9 23852314 23856753 PCT