Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1421 ATGGGTAATCACATGGCAACTTACAACAAATACAAAAGTTTCTTGCTCTTTATCAGAAAGTACAAGGTCATGGACTTGGTTCCACCTCAAGACCTCAAGGAGGTGTTCACAAAGTTCAGTGAAGGAGGGTCCTACATGTCCATTGAGCAACTCCGCCACTTCCTAGTGGAGCACCAGGGTGAGGAGGATTGCACCTTATCAAATTTTGAGAAAATTGTTGAGAAGGTCCTACAAGTGAGAAAGTCATGTCATGGAAATGTTAACGTTGATCAAAGTAAAGAACGAGAAATCACCCTTGAAGACCTCTTCCATTTCTTGCTTCATGATGATTTCAATGCTCCCTTGAAATCTGAGGTACATAATGACATGAGTGCTCCATTATCACATTATTTCATATATACTGGGCATAACTCATATCTTACTGGGAATCAATTGAGCAGTGATTGTAGTGAAGAGCCAATCATAAAGGCTTTAAAACGAGGCGTGCGTGTTATTGAACTTGATTTATGGCCAACTTCCAATAGAGATGATATTAAAGTAGATCATGGATGGACTCTTACCAACCCTGTCTCAGTTATCAAATGTCTTGAGTCCATAAAGGAATATGCTTTTGTTGCATCTCAGTACCCAGTGATAATAACTATAGAAGACCATCTTACAACAGACCTTCGAGCTAAATTTGCAGTAATGGTAACCCAAATATTTGGAGAAATGCTTTATTATCCTGAGACAGATTACATAACCGAATTTCCTTCGCCAGAATCATTAAAAAATCGAGTTATAATATCAACCAAACCCCCAAAAGAATGCTTTGAGTCTAACCGTATCAAGGACAATGACAACTGTCCTGGGATAAATGAAAGTGAATCATCATCGGAAGAAGAATTATGGGGAAAGGAATCTCCAGACTCAAATAGGACTGAAGTGGAAACTGAAGGCACTAATGGAAGTGATCGTGATGAGGGAGATATGAATGCATGTGAATGTGATCATAAATCATATCAAGAATGTTTACCAGAGTACAAACGAATAATTACTATCCACAACAGAAAATTCAAGGGTAGCTTGAAGGATAAATTGAAAACTGATGGTGAACTTAGACGCCTAAGTTGGAGTGAAACGACCCTTGAAAAGGCTTCCGAATCTCATGGAACAGATATTGTTAGGTTCACACAGAAGAATATCCTCAGGGTATACCCAAGTGCAATGCGTGTCAAATCCTCAAATTTCAAGCCACATATTGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAACATGCAGGGGCATGGCAAATCACTCTGGTTGATGCAGGGGATGTTCAGGGCAAATGGAGGATGTGGTTACGTAAAAAAGCCTAAAATTCTTATGCAGAAACATCAATGTGACAATGAGTTTGATCCTACAAGGATATTGCCAGTGAAGAAGAAATTAAAGGTAAAAGTATATCTGGGACATGGATGGAGCTTAGATTTCAGTCCTACACACTTTGATAAGTGCTCTCCACCAGACTTTTACGCCAAGATTTATATTATTGGAATGCCTGCTGATTTTGCAAAGAAGAAAACAAAGGTAATCATGGACAATTGGCTTCCTGTTTGGGATGAAGAGTTTGAATTCCGATTAACTGTTCCAGAGCTTGCATTGCTTCTAATACAAGTAAAGGACAAAGATCAAGGAAAGGATGACTTTGCTGGGCAAACATGTTTGCCAGTGTCTGAGCTAAAACTTGGATTTCGTTCAGTCCCTTTACATAACAAAAAAGGAGAGAAATTCAAATCTGTCAAGTTATTGATACGGTTTCAGTTGGAATGA 1815 0.3901 MGNHMATYNKYKSFLLFIRKYKVMDLVPPQDLKEVFTKFSEGGSYMSIEQLRHFLVEHQGEEDCTLSNFEKIVEKVLQVRKSCHGNVNVDQSKEREITLEDLFHFLLHDDFNAPLKSEVHNDMSAPLSHYFIYTGHNSYLTGNQLSSDCSEEPIIKALKRGVRVIELDLWPTSNRDDIKVDHGWTLTNPVSVIKCLESIKEYAFVASQYPVIITIEDHLTTDLRAKFAVMVTQIFGEMLYYPETDYITEFPSPESLKNRVIISTKPPKECFESNRIKDNDNCPGINESESSSEEELWGKESPDSNRTEVETEGTNGSDRDEGDMNACECDHKSYQECLPEYKRIITIHNRKFKGSLKDKLKTDGELRRLSWSETTLEKASESHGTDIVRFTQKNILRVYPSAMRVKSSNFKPHIGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPKILMQKHQCDNEFDPTRILPVKKKLKVKVYLGHGWSLDFSPTHFDKCSPPDFYAKIYIIGMPADFAKKKTKVIMDNWLPVWDEEFEFRLTVPELALLLIQVKDKDQGKDDFAGQTCLPVSELKLGFRSVPLHNKKGEKFKSVKLLIRFQLE* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1421 604 CDD C2_PLC_like 485 604 - -
Apr9g1421 604 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Apr9g1421 604 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Apr9g1421 604 PRINTS Phospholipase C signature 249 266 IPR001192 GO:0035556
Apr9g1421 604 PRINTS Phospholipase C signature 395 416 IPR001192 GO:0035556
Apr9g1421 604 PRINTS Phospholipase C signature 416 434 IPR001192 GO:0035556
Apr9g1421 604 PRINTS Phospholipase C signature 570 580 IPR001192 GO:0035556
Apr9g1421 604 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 604 IPR001192 GO:0035556
Apr9g1421 604 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 265 - -
Apr9g1421 604 SUPERFAMILY EF-hand 12 123 IPR011992 -
Apr9g1421 604 MobiDBLite consensus disorder prediction 273 323 - -
Apr9g1421 604 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 604 - -
Apr9g1421 604 Pfam C2 domain 479 577 IPR000008 -
Apr9g1421 604 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 348 454 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr9g1421 604 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 265 IPR000909 -
Apr9g1421 604 MobiDBLite consensus disorder prediction 292 323 - -
Apr9g1421 604 SMART plcx_3 121 265 IPR000909 -
Apr9g1421 604 SUPERFAMILY PLC-like phosphodiesterases 121 458 IPR017946 GO:0006629|GO:0008081
Apr9g1421 604 SMART plcy_3 341 457 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr9g1421 604 Gene3D C2 domain 472 604 IPR035892 -
Apr9g1421 604 SMART C2_3c 477 584 IPR000008 -
Apr9g1421 604 Gene3D - 24 116 - -
Apr9g1421 604 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 370 456 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr9g1421 604 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 469 IPR017946 GO:0006629|GO:0008081
Apr9g1421 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 477 602 IPR035892 -
Apr9g1421 604 ProSiteProfiles C2 domain profile. 458 586 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1421 Apr-Chr9 23837208 23840720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1421 3 604 Acyl Lipid Metabolism Gene Families AT2G40116 54.487 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1421 K05857 - gmx:100820253 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2113 10 33805055 33810333 Apr9g1421 9 23837208 23840720 PCT