Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2113 ATGGAGAGCTACAAGACCAAGTTGTTAAGTTTGTTGACCAGAAAAGGTGAAGTCAACAAGGCAGAACCCCCTTTGGACATTAAGGAGGCATTTTCCAAGTTTGCTAGAGGAGGGAACCAAATAATGAAGGATCAGCTTCTTAGGTTCATGGTGGATCACCAGGGAGAAAAAATCAACACCTTTGAGGATTTGGAGAAAATAGTTCAAAAGGTTTTGCAAGTAGGAAGTTCTAGCACTAAAACTAGCAGTAATAGTAGTGTTGCAGATGTGCTTAGGAGGCAAGGATTAAGTCTCAATGACTTCATTGATTTTTTGCTCCTTGATGATTTCAATGGTCCCTTGAAAGAGGAGGTACATCATGATATGAGTGCTCCCTTGTCACATTATTTCATGTATACGGGGCACAATTCCTATTTGACCGGGAATCAACTTACCAGTGAGAGCAGTGATGAGCCAATTATAGAGGCTTTGCAACAGGGTGTGCGAGTAATTGAACTAGATTTATGGCCATCATCAACTAAAGATGGTATTAAAGTAGTTCATGGAAGGACTCTCACCACTCCTGTTTCACTGACCAAATGTCTTAGATCCATAAAGGAATATGCTTTTGTTAAATCTGATTTTCCAGTTATTCTAACATTGGAAGACCACTTATCATCTACACTTCAAGATAAATTTGCAGCAATGGCAACTCAAATATTTGGAGAAATGCTCTATTGTCCTCAGACAGATTGTTTGACAGAATTCCCCTCACCAGAATCACTGAAAAATAGGATAGTTATATCAACCAAACCACCAAAGGAATATCCACAATCTAGTATCAGCAAACCTATGCCAAATGAAAGTGATTCATCTGAAGAAGAATCACGGGGACTTGAATTGCAAGATTCTATGGCTAAACTGAAAACTGAAGACAAGAATGCAAGTGATGAAGATCATGAAGACATAAATGAATGTGATAACATACCAAATCAGCAAGATGCACGTCAATACAAACACTTGATCACAATCTATGGTGGAAAATCAAAAGGTTCTATGAAGGATCGACTGAAAGATGATACTAAAGTTAGACGGCTAAGCTTGAGTGAGAAGAAACTTAAAAGTGCTTGTGAGTCTCATGGAGCAGACCTTATTAGGTTCACACAGAAAAATATCCTGAGAGTTTACCCTAAAGGAGAACGTGTCCAATCCTCAAATTTCAGACCACATTTAGGGTGGATTTATGGAGCTCAAATGGTGGCATTCAATATGCAGGGGCATGACAAATCACTCAGGTTGATGCAGGGGTTATTCAGAGCAAATGGGGGGTGTGGTTATGTTAAAAAGCCTGAATTTCTGATCCGAAAACTTCCACATGAAGAGGAGTTTCATCCTAAAAGAACAATGCCGGTGAAGCAGATATTAAAAGTAAAAGTATACAGAGGAGATGGCTGGAGTTCAGATTTCAGTGCAACACACTTTGATCGGTTCTCTCCCCCAGACTTTTACACAAAGGTATACATTGTTGGAGTGCCTGCTGATTCTGACAAGAAGAAAACAAAAGTAAAGATGGACACTTGGTATCCTGTTTGGGATGAAGAGTTTGAATTCCCCTTAACTGTTCCTGAGCTTGCTTTGCTTCGGATTGAAGTAAAGGATAAAGATAAGGGAAAGGATGACTTTGCAGGACAAACTTGTTTGCCCGTATCAGAGCTAAGACATGGATTTCGGTCAGTCCCTCTGTATGATCGAAAGGGAAAGAAATTTAATTCTGTGAAGCTTCTAATGCGGTTTAAGCTTGAAATTTAG 1788 0.3943 MESYKTKLLSLLTRKGEVNKAEPPLDIKEAFSKFARGGNQIMKDQLLRFMVDHQGEKINTFEDLEKIVQKVLQVGSSSTKTSSNSSVADVLRRQGLSLNDFIDFLLLDDFNGPLKEEVHHDMSAPLSHYFMYTGHNSYLTGNQLTSESSDEPIIEALQQGVRVIELDLWPSSTKDGIKVVHGRTLTTPVSLTKCLRSIKEYAFVKSDFPVILTLEDHLSSTLQDKFAAMATQIFGEMLYCPQTDCLTEFPSPESLKNRIVISTKPPKEYPQSSISKPMPNESDSSEEESRGLELQDSMAKLKTEDKNASDEDHEDINECDNIPNQQDARQYKHLITIYGGKSKGSMKDRLKDDTKVRRLSLSEKKLKSACESHGADLIRFTQKNILRVYPKGERVQSSNFRPHLGWIYGAQMVAFNMQGHDKSLRLMQGLFRANGGCGYVKKPEFLIRKLPHEEEFHPKRTMPVKQILKVKVYRGDGWSSDFSATHFDRFSPPDFYTKVYIVGVPADSDKKKTKVKMDTWYPVWDEEFEFPLTVPELALLRIEVKDKDKGKDDFAGQTCLPVSELRHGFRSVPLYDRKGKKFNSVKLLMRFKLEI* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2113 595 ProSiteProfiles C2 domain profile. 450 576 IPR000008 -
Apr10g2113 595 MobiDBLite consensus disorder prediction 266 280 - -
Apr10g2113 595 SMART C2_3c 467 574 IPR000008 -
Apr10g2113 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 360 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr10g2113 595 Pfam C2 domain 467 567 IPR000008 -
Apr10g2113 595 SMART plcx_3 120 264 IPR000909 -
Apr10g2113 595 MobiDBLite consensus disorder prediction 262 294 - -
Apr10g2113 595 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 594 - -
Apr10g2113 595 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr10g2113 595 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 467 592 IPR035892 -
Apr10g2113 595 CDD C2_PLC_like 465 594 - -
Apr10g2113 595 Gene3D C2 domain 462 595 IPR035892 -
Apr10g2113 595 Gene3D Phosphatidylinositol (PI) phosphodiesterase 116 460 IPR017946 GO:0006629|GO:0008081
Apr10g2113 595 Pfam Phosphatidylinositol-specific phospholipase C, X domain 122 264 IPR000909 -
Apr10g2113 595 Gene3D - 22 112 - -
Apr10g2113 595 PRINTS Phospholipase C signature 125 143 IPR001192 GO:0035556
Apr10g2113 595 PRINTS Phospholipase C signature 151 171 IPR001192 GO:0035556
Apr10g2113 595 PRINTS Phospholipase C signature 248 265 IPR001192 GO:0035556
Apr10g2113 595 PRINTS Phospholipase C signature 385 406 IPR001192 GO:0035556
Apr10g2113 595 PRINTS Phospholipase C signature 406 424 IPR001192 GO:0035556
Apr10g2113 595 PRINTS Phospholipase C signature 560 570 IPR001192 GO:0035556
Apr10g2113 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 120 264 - -
Apr10g2113 595 SMART plcy_3 331 447 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Apr10g2113 595 SUPERFAMILY PLC-like phosphodiesterases 120 448 IPR017946 GO:0006629|GO:0008081
Apr10g2113 595 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 594 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2113 Apr-Chr10 33805055 33810333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2113 3 594 Acyl Lipid Metabolism Gene Families AT2G40116 55.285 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2113 K05857 - gmx:100803435 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2113 10 33805055 33810333 Apr9g1421 9 23837208 23840720 PCT