Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1402 ATGGAGGATCGGAGCGTGGGAAGGATGAGCACGACGTTGACGGACATGGTGCTTGACTTGGTGATGCGGTACATCGACGACCCCAGGGACCGTGACGCCGTGTCTCAGGTGTGCCACCACTGGTACGAGATGGACTCGCTCACGCGCAAGCACGTGACTATTGCGCTCTGCTATACCACCACACCGTGCCGCCTTCGCCGGCGGTTTCCACACCTGGAGTCGCTGAAGCTGAAAGGAAAACCCAGGGCTGCTATGTTCAACCTGATACCGGAGGATTGGGGAGGTTTTGTGACTCCTTGGGTTAGAGAGATCTCACAGCACTTCGATTGCTTGAAGTCTCTTCACTTCCGTCGCATGATTGTCACCGATTCCGATCTTAAGCTTCTTGCTCGTTCCCGTGGTCACATTCTTCAAGCGCTTAAGCTGGACAAGTGTTCTGGATTCTCCACCGATGGCCTCTGGTATATTGGAAGATTTTGCAGGATTCAGGACCTTGAACTCATAGCCATAAATTGCCCTAAATTAGTCTCTGTGAAAATTACTGATTGTGAAATATTGGATCTGGTGAACTTCTTTCGATGTGCATCTGCTCTAGAAGAATTTTGTGGGGGTTTCTACAATGAGGAACCAGAGAAGTACTCTGCTATATCGTTGCCAGCAAAGTTAAATCGATTGGGTTTGACATATATTGGGAAGAATGAAATGCCCATAGTGTTCCCTTATGCAGCCCAACTGAAAAAATTGGATCTTCTCTACGCGATGCTGGATACAGAGGATCATTGCACGCTAATCCAAAGGTGCCCCAACTTGGAAGTCCTTGAGTCAAGGAACGTAATTGGAGACAGAGGATTAGAAGTACTGGCTCGCTGTTGTAGGAGGCTTAAAAGGCTTCGGATTGAACGAGGTGACGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCCCAGAGAGGACTAATTGCTTTGTCTCATGGCTGTCCAGAACTTGAATACTTGGCTGTTTATGTATCCGATATTACAAATGCCTCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGCGATTTTCGCCTTGTCTTGCTAGACCGTGAAGAGAAGATAACTGATTTGCCACTTGACAACGGAGTAAGGGCTTTACTGAGGGGTTGTGACAAGCTTAGAAGATTTGCTTTGTATCTTAGACCTGGGGGCTTGACTGACGTAGGGCTCGGTTACATAGGGCAATACAGCCCAAACGTGAGATGGATGCTTCTTGGTTATGTGGGGGAGACTGATGCAGGGCTTTTGGAGTTCTCTAAGGGCTGTCCCAGTCTTCAGAAACTTGAAATGAGGGGATGCTCCTTTTTTAGTGAGTATGCACTATCTGTTGCTGCAACTCAACTGACTTCTCTGAGGTATCTATGGGTTCAAGGATATGGAGCATCTCCATCTGGGCGTGATCTTTTGGCCATGGCTCGCCCCTTTTGGAATATTGAGTTGATTCCTTCTAGACGCGTGGTTGTTTGCAATACCCAGGATGAGCGACCTGTAATTGTTGAGCATCCGGCTCATATTCTTGCATATTACTCCCTTGCTGGCCAAAGAACAGATTTTCCAGATACTGTTAAACCTTTGGATCCTGCTGCATATGTTGTTGACACGTAA 1650 0.4715 MEDRSVGRMSTTLTDMVLDLVMRYIDDPRDRDAVSQVCHHWYEMDSLTRKHVTIALCYTTTPCRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVREISQHFDCLKSLHFRRMIVTDSDLKLLARSRGHILQALKLDKCSGFSTDGLWYIGRFCRIQDLELIAINCPKLVSVKITDCEILDLVNFFRCASALEEFCGGFYNEEPEKYSAISLPAKLNRLGLTYIGKNEMPIVFPYAAQLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRRLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALSVAATQLTSLRYLWVQGYGASPSGRDLLAMARPFWNIELIPSRRVVVCNTQDERPVIVEHPAHILAYYSLAGQRTDFPDTVKPLDPAAYVVDT* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1402 549 SUPERFAMILY RNI-like 67 299 - -
Apr9g1402 549 Pfam F-box 11 51 IPR041567 -
Apr9g1402 549 Gene3D Ribonuclease Inhibitor 50 544 IPR032675 -
Apr9g1402 549 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 11 161 - -
Apr9g1402 549 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 161 543 - -
Apr9g1402 549 Pfam Transport inhibitor response 1 protein domain 70 116 IPR041101 -
Apr9g1402 549 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 11 161 - -
Apr9g1402 549 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 161 543 - -
Apr9g1402 549 SUPERFAMILY RNI-like 239 485 - -
Apr9g1402 549 SMART LRR_CC_2 385 411 IPR006553 -
Apr9g1402 549 SMART LRR_CC_2 437 461 IPR006553 -
Apr9g1402 549 SMART LRR_CC_2 327 351 IPR006553 -
Apr9g1402 549 SMART LRR_CC_2 267 290 IPR006553 -
Apr9g1402 549 SMART LRR_CC_2 134 159 IPR006553 -
Apr9g1402 549 Gene3D - 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1402 Apr-Chr9 23614638 23619206 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1402 K13463 - gmx:100793081 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1402 9 23614638 23619206 Apr9g1402 9 23614638 23619206 ECH
Apr10g2089 10 33617744 33621353 Apr9g1402 9 23614638 23619206 PCT