Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2089 ATGATGGAAGATCGCAACCTCAGAAGAACCCGTGTTCTCGACGTTGTTCTCGACTGTGTTATACCTTACATACACGACCCAAAGGACCGTGACGCCGTTTCTCAGGTTTGTCGAAGGTGGCACGAGCTTGACTCGTTGACAAGAAAGCATGTCACTATTGCTCTCTGCTACACCACCACGCCGGCGCGTCTACGTCACCGCTTCCCTCACTTGGAGTCTTTGAAGCTTAAGGGCAAACCCCGAGCTGCAATGTTCAACTTGATACCTGAGGATTGGGGTGGTCACGTCACCCCTTGGGTTAAAGAGATTTCGCAGTATTTTGATTGTCTTAAAAGTCTTCATTTTCGCCGTATGATTGTCAAAGATTCTGATCTTGAGCTTCTTGCTTCTTCCCGTGGTCACGTGCTTCAAGGTCTTAAGCTTGATAAGTGCTCTGGTTTTTCCACTGATGGACTTTATTATATTGGTCGCTCTTGCAGGAATTTAAAGGTCTTGCTTTTGGAGGAAAGCACGATTCTTGAGAACGATGGTGAATGGCTACATGAGCTTGCTTTGAATAATACAGCTCTAGAGACCTTGAATTTTTACTTGACAGATATTGCCGATATCAAAATTCAGGACCTTGAACTTTTAGCCAGAAATTGCCCCAACTTAGTGTCTGTGAAACTTACTGATTGTGAAATATTAGATCTCGTGAACTTCTTCCGGTATGCCTCTTCTCTGGAAGAGTTTTGTGGAGGCACTTACAATGAGGAACCAGAAAGATACTCTGCTGTATCATTACCAGCAAGGCTATGTCAACTGGGCTTAACGTATATTGGAAAGAACGAGTTGCCAATAGTGTTTATGTTTGCGGCTGGACTAAAAAAGTTGGATCTCCTCTATGCCATGCTGGATACAGAGGATCATTGTATGTTAATCCAAAGGTGCCCAAATCTTGAAGTCCTTGAGTCAAGGAATGTAATTGGAGATAGGGGGTTGGAAGTTCTTGGCCGCTGTTGTAGGAGGCTGAAAAGGCTTAGGATTGAACGAGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTTTCCCATAGAGGACTAATTGCTTTGTCACAGGGCTGTCCAGAGCTTGAATACTTGGCTGTTTATGTGTCCGATATCACAAATGCATCTTTGGAGCACATTGGAACTCACTTGAAAAACCTCTGTGATTTTCGCCTTGTCTTGCTTGATCATGAAGAGAAAATAACTGATTTGCCACTTGACAATGGAGTCCGAGCTCTGCTGAGGGGCTGTGACAAGCTTAGAAGATTTGCTCTATATCTCAGGCGTGGAGGCTTAACTGATGTTGGTCTTGGTTACATTGGACAGTACAGTCCAAATGTGAGGTGGATGCTGCTTGGTTATGTGGGGGAATCTGATGCAGGGCTTTTGGAGTTCTCAAAGGGTTGTCCTAGTCTTCAAAAACTTGAGATGAGAGGGTGTTCTTTTTTCAGTGAGCATGCATTAGCTATTGCTGCAACACAGTTAACTTCTCTTAGGTACTTGTGGGTGCAAGGGTATGGTGCATCTCCTTCTGGACGTGATCTTTTGGCAATGGCTCGCCCCTTTTGGAACATTGAGTTGATTCCTTCCAGGAAAGTGGCCAACAATCATGATGATCAACCAATAGAGCATCCAGCTCATATTCTTGCATACTACTCTCTTGCAGGCCAAAGATCTGATTTTCCAGATACTGTTGTGCCTTTGAATCCTGCCATGTGTCTCGACGTCTAG 1764 0.4444 MMEDRNLRRTRVLDVVLDCVIPYIHDPKDRDAVSQVCRRWHELDSLTRKHVTIALCYTTTPARLRHRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVKEISQYFDCLKSLHFRRMIVKDSDLELLASSRGHVLQGLKLDKCSGFSTDGLYYIGRSCRNLKVLLLEESTILENDGEWLHELALNNTALETLNFYLTDIADIKIQDLELLARNCPNLVSVKLTDCEILDLVNFFRYASSLEEFCGGTYNEEPERYSAVSLPARLCQLGLTYIGKNELPIVFMFAAGLKKLDLLYAMLDTEDHCMLIQRCPNLEVLESRNVIGDRGLEVLGRCCRRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCPELEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKITDLPLDNGVRALLRGCDKLRRFALYLRRGGLTDVGLGYIGQYSPNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSEHALAIAATQLTSLRYLWVQGYGASPSGRDLLAMARPFWNIELIPSRKVANNHDDQPIEHPAHILAYYSLAGQRSDFPDTVVPLNPAMCLDV* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2089 587 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 10 582 - -
Apr10g2089 587 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 10 582 - -
Apr10g2089 587 Gene3D - 2 48 - -
Apr10g2089 587 Pfam F-box 10 50 IPR041567 -
Apr10g2089 587 Gene3D Ribonuclease Inhibitor 49 583 IPR032675 -
Apr10g2089 587 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Apr10g2089 587 SUPERFAMILY RNI-like 87 517 - -
Apr10g2089 587 SMART LRR_CC_2 428 454 IPR006553 -
Apr10g2089 587 SMART LRR_CC_2 480 505 IPR006553 -
Apr10g2089 587 SMART LRR_CC_2 133 158 IPR006553 -
Apr10g2089 587 SMART LRR_CC_2 370 394 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2089 Apr-Chr10 33617744 33621353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2089 K13463 - gmx:100779171 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2089 10 33617744 33621353 Apr10g2089 10 33617744 33621353 ECH
Apr10g2089 10 33617744 33621353 Apr9g1402 9 23614638 23619206 PCT