Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr9g1361 | ATGGCCATCAATAATGGCGAGGGAAGTGAAGGAGGAACATTGCAAAGGCTTCTTTACATGTGGGGTTACCTTCCCGGAGCTTTGCCGCAGAGGACGCCGTTATTGACGCCCGTTCCTGTTAGGTTTCCGCCGTCTGGGTACTCTTGGAAAGATGTTTGTGGTGGTGGCTGTGGATTCGCTATGGCTATCTCTGAACCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGTTATGTGACTTCAGGCAAGCATGGGGAAACACCAGAGCCTTTTCCTCTTCCAACTGAAGCCTCTATTGTAAAAGCAGCAGCTGGATGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTATATACATGGGGATGGAAAGAATGCATTCCCTCTGGGAGGGTATTTGGGGAACCATCAACTGGGGTAAGTCTCGAGAAAGATGTGCCAGGAAGGCAAAGTCCATTGTCCACAGAGCAAGCGAGCCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCTTCCAGTAACAGCGGAGAAGAAAGTACAAAGCGAAGGAGAGTATCTTCAGCAAAGCAAACAGCTGAAAGCTCATCATCCAGTGATGATACTCTGACAGCATTTCCTTGTCTTGTCACACTAAACCCAGGGATAAGGATAGCTACTGTTGCTGCTGGTGGACGTCACACCCTAGCATTGTCAGATACAGGACTAGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCCAGAATACGTATGGTTTCCTCTCCTCATCTTGTTCCTTGTATTGATTCCTCTTACTATGGTAAAGATTGGTCTACAACATTGGCTCGAGGAAGCATAGGGTCAGATGGTCAGAATTTTAGAATTCCTGGAAGTTATGTCAAGAAAATTGCTTGTGGAGGTCGACATAGTACAGTAATTACAGATGCTGGAGCTTTGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAACTACGGATGATGAACTAAGCCCAACCTGTGTATCTTCTTTATTGGGTATCCAAATTGAAGGAGTTGCTGCAGGACTGTGGCACACAGTATGTACAACTGCTGATGGGGATGTCTATGCATTTGGTGGGAATCAGTTTGGGCAGCTGGGAACCGGGGCTGATCAAGCTGAGACTCTACCAAGTCTAGTGGATTCTCCAAGTTTGGAAAATACGCATGTAAAGAACATATCTTGTGGTGCTCGTCACACTGCTTTAATAACAGAGGGTGGAAAAGTTTTCTGCTGGGGTTGGAACAAATATGGACAGCTGGGTCTTGGTGATGTGATTGACCGTAACGTTCCTTCCGAAGTCACAATTGAAGGTTGTGTCCCTAAAAATGTTGCTTGCGGTTGGTGGCATACTCTTCTTCTGGCTGAGTCACCCACTTGA | 1434 | 0.4742 | MAINNGEGSEGGTLQRLLYMWGYLPGALPQRTPLLTPVPVRFPPSGYSWKDVCGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVSLEKDVPGRQSPLSTEQASPRSQGSRSTGGTASSNSGEESTKRRRVSSAKQTAESSSSSDDTLTAFPCLVTLNPGIRIATVAAGGRHTLALSDTGLVWGWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSYYGKDWSTTLARGSIGSDGQNFRIPGSYVKKIACGGRHSTVITDAGALLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIQIEGVAAGLWHTVCTTADGDVYAFGGNQFGQLGTGADQAETLPSLVDSPSLENTHVKNISCGARHTALITEGGKVFCWGWNKYGQLGLGDVIDRNVPSEVTIEGCVPKNVACGWWHTLLLAESPT* | 478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr9g1361 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 371 | 424 | IPR000408 | - | |
| Apr9g1361 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 103 | 116 | IPR000408 | - | |
| Apr9g1361 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 122 | 138 | IPR000408 | - | |
| Apr9g1361 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 225 | 241 | IPR000408 | - | |
| Apr9g1361 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 360 | 378 | IPR000408 | - | |
| Apr9g1361 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 420 | 441 | IPR000408 | - | |
| Apr9g1361 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 411 | 421 | IPR000408 | - | |
| Apr9g1361 | 477 | MobiDBLite | consensus disorder prediction | 152 | 181 | - | - | |
| Apr9g1361 | 477 | SUPERFAMILY | RCC1/BLIP-II | 19 | 475 | IPR009091 | - | |
| Apr9g1361 | 477 | Gene3D | - | 11 | 141 | IPR009091 | - | |
| Apr9g1361 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 222 | 251 | - | - | |
| Apr9g1361 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 103 | 127 | - | - | |
| Apr9g1361 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 319 | 370 | IPR000408 | - | |
| Apr9g1361 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN | 15 | 477 | - | - | |
| Apr9g1361 | 477 | MobiDBLite | consensus disorder prediction | 142 | 205 | - | - | |
| Apr9g1361 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 370 | 421 | IPR000408 | - | |
| Apr9g1361 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 425 | 472 | IPR000408 | - | |
| Apr9g1361 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 319 | 366 | IPR000408 | - | |
| Apr9g1361 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 225 | 235 | IPR000408 | - | |
| Apr9g1361 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 67 | 119 | IPR000408 | - | |
| Apr9g1361 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 425 | 475 | IPR000408 | - | |
| Apr9g1361 | 477 | Gene3D | - | 288 | 476 | IPR009091 | - | |
| Apr9g1361 | 477 | Gene3D | - | 194 | 287 | IPR009091 | - | |
| Apr9g1361 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 239 | 318 | IPR000408 | - | |
| Apr9g1361 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 15 | 477 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr9g1361 | Apr-Chr9 | 23249237 | 23256224 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr9g1361 | - | - | gmx:100807837 | 888.256 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Apr9g1361 | 9 | 23249237 | 23256224 | Apr10g2057 | 10 | 33357630 | 33363476 | ECH | |
| Apr9g1361 | 9 | 23249237 | 23256224 | Apr9g1361 | 9 | 23249237 | 23256224 | ECH | |
| Apr10g2057 | 10 | 33357630 | 33363476 | Apr9g1361 | 9 | 23249237 | 23256224 | PCT |