Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g2057 | ATGAACGGCGACGGGATTGAAGCAATGCAAGTGGAGAAGGAGAGGTTGGTGTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGTTATTGACGCCGGTTAGGGTTCCGCCGTCTGATTACCCTTGGTGGGATGTTTGCGGTGGTGGTTGTGGATTTGCCATGGCTATCTCTGCACAAGGAAAGCTCATAACATGGGGTTCAGCAGATGATTTAGGCCAAAGCTATGTCACATCTGGCAAACATGGGGCAACTCCAGAGCCTTTCCCTCTTCCTGCTGAAGCGCCTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTATCTGTGACAGATAGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTGTTCCCTCTGGGAAGGTACTTGGCGAATCATCAATTGTGGTAAGTCCCGAAAAGGATGTACCAGGAAGGCAAAGTTCATTCTTGACGGAGCAAGTGATACCACGTTCTCAGGGGTCAAAATCTATTGGAGGAACTACCTCCAGTACCAGTGGAGAAGAAAGTACAAAGAGAAGGAGAGTATCGTCAGCAAAGCAAACAGCTGAAACCTCGACATCTAGTGATGATACTATGACAGCGTTGCCGTGTCTTGTCACATTAAACCCTGGTGTAAGGATATCAAGTGTTGCTGCTGGTGGGCGCCATACCTTAGCATTGTCAGATACAGGGCAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTTGTTCCTTGTATTGATTCCTCTTCTTATGGTAAAGATATATCACGGGCTCAAGGAAGCATGAGTTCAGAGGGACAAAATTTTAGAGTTCCAGGAAGTTATGTGAAAGGAATTGCCTGTGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTACTTTTGGTTGGGGACTTTATGGACAGTGCGGGCAAGGAAGTACAGATGATGAACTTAGTCCAACTTGCGTGTCTTCCTTATTGGGTATCCGAATAGAGGGAGTTGCTGCAGGTTTGTGGCATACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAATTTGGACAGCTGGGAACTGGTGCTGATCAAGCTGAGCAGACTGTACCGAGGCTACTGGATTGTCCGAGCTTGGAAAATGTGAATGTAAAGAGCATATCATGTGGGGCTCGTCACACTGCTCTAATAACAGACAATGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGCTGGGCCTTGGGGATGTGATTGACCGTAACATTCCTTCTGAAGTTACCATGGAAGGTTGTGTAGCTAAAAACGTTGCATGTGGGTGGTGGCATACTCTTCTTCTGGCTGAATCACCCACTTGA | 1422 | 0.481 | MNGDGIEAMQVEKERLVYMWGYLPGALPQRTPLLTPVRVPPSDYPWWDVCGGGCGFAMAISAQGKLITWGSADDLGQSYVTSGKHGATPEPFPLPAEAPIVKAAAGWAHCVSVTDSGEVYTWGWKECVPSGKVLGESSIVVSPEKDVPGRQSSFLTEQVIPRSQGSKSIGGTTSSTSGEESTKRRRVSSAKQTAETSTSSDDTMTALPCLVTLNPGVRISSVAAGGRHTLALSDTGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSSYGKDISRAQGSMSSEGQNFRVPGSYVKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAEQTVPRLLDCPSLENVNVKSISCGARHTALITDNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTMEGCVAKNVACGWWHTLLLAESPT* | 474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g2057 | 473 | MobiDBLite | consensus disorder prediction | 149 | 178 | - | - | |
| Apr10g2057 | 473 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 421 | 471 | IPR000408 | - | |
| Apr10g2057 | 473 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 420 | 468 | IPR000408 | - | |
| Apr10g2057 | 473 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 365 | 417 | IPR000408 | - | |
| Apr10g2057 | 473 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 314 | 361 | IPR000408 | - | |
| Apr10g2057 | 473 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 300 | 310 | IPR000408 | - | |
| Apr10g2057 | 473 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 314 | 365 | IPR000408 | - | |
| Apr10g2057 | 473 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN | 10 | 473 | - | - | |
| Apr10g2057 | 473 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 366 | 420 | IPR000408 | - | |
| Apr10g2057 | 473 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 222 | 232 | IPR000408 | - | |
| Apr10g2057 | 473 | PRINTS | Chromosome condensation regulator RCC1 signature | 100 | 113 | IPR000408 | - | |
| Apr10g2057 | 473 | PRINTS | Chromosome condensation regulator RCC1 signature | 119 | 135 | IPR000408 | - | |
| Apr10g2057 | 473 | PRINTS | Chromosome condensation regulator RCC1 signature | 222 | 238 | IPR000408 | - | |
| Apr10g2057 | 473 | PRINTS | Chromosome condensation regulator RCC1 signature | 238 | 252 | IPR000408 | - | |
| Apr10g2057 | 473 | PRINTS | Chromosome condensation regulator RCC1 signature | 355 | 373 | IPR000408 | - | |
| Apr10g2057 | 473 | PRINTS | Chromosome condensation regulator RCC1 signature | 416 | 437 | IPR000408 | - | |
| Apr10g2057 | 473 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 64 | 116 | IPR000408 | - | |
| Apr10g2057 | 473 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 100 | 124 | - | - | |
| Apr10g2057 | 473 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 219 | 248 | - | - | |
| Apr10g2057 | 473 | Gene3D | - | 11 | 153 | IPR009091 | - | |
| Apr10g2057 | 473 | SUPERFAMILY | RCC1/BLIP-II | 17 | 471 | IPR009091 | - | |
| Apr10g2057 | 473 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 10 | 473 | - | - | |
| Apr10g2057 | 473 | MobiDBLite | consensus disorder prediction | 143 | 202 | - | - | |
| Apr10g2057 | 473 | Gene3D | - | 191 | 275 | IPR009091 | - | |
| Apr10g2057 | 473 | Gene3D | - | 276 | 473 | IPR009091 | - | |
| Apr10g2057 | 473 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 407 | 417 | IPR000408 | - | |
| Apr10g2057 | 473 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 236 | 313 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr10g2057 | Apr-Chr10 | 33357630 | 33363476 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g2057 | - | - | gmx:100778841 | 836.254 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Apr9g1361 | 9 | 23249237 | 23256224 | Apr10g2057 | 10 | 33357630 | 33363476 | ECH | |
| Apr10g2057 | 10 | 33357630 | 33363476 | Apr10g2057 | 10 | 33357630 | 33363476 | ECH | |
| Apr10g2057 | 10 | 33357630 | 33363476 | Apr9g1361 | 9 | 23249237 | 23256224 | PCT |