Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1344 ATGCCGTTCGTTTCCAAAATCGATCGCCAATCGGATTTCAACGACTTTAGTTCCCAAACTCCTATCGTTATCGACAATGGCGCCTCCTATTTACGCATTGGATGGGCGGGTGAGTCTGAACCTCGCGTTATTTTTCGCAACATTGTGCTCAGGCCACGCCATAAAGTAACTGGGGAAACTGTCACTGTTGTGGGTGACCCTGATCCGGCATTACTGAAATACTTTGACTGCACTCGCTCTGGGCCATGCTCAGCATTTGACAACAATGTGGTTTACCAGTTTGAAACTATGGAATATATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAGTTGAATCTCGTTGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCAATTGCCTTTGGTGTTGATATCGCATTCAGCTACAAGTATAATCAACAACAAGGAGTTTGTGCTAAAGATGGTCTTGCTTTGTGTCCTGGATTCACCGCAACCCATGTGATTCCGTTTGTAGATGGGGAGCCTGTTTACAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTGAAGCAACTTCTTTCACTCAAATATCCTTATCATTCGGCAAGATTTACATTGGAAAAGGTTGAAGACCTGAAGATGGAGCATTGTTACATTGCACCAGATTATGTTTCTGAAGCTCGGTTGTTTCAGGAAGGAGCCAAGGAGGCTGAAGAAATAACCAAATATTGGCAGCTCCCCTGGGTTCCACCTCCAACTGAGGAGCCTCCTTCTGAGGAAGAGGTTGCAAGAAAGGCAGCAATAAAAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCCGAGGCAAAGAAGTCTTCTAAGATAAATGAACTGGAAAATGAATTGCATGGTTTGGAGTTTCTTTCGCATCAGCTTGAACAAGTGGATGAGACTGATGTTCCATCTTTCCTGGCAGAAACTGGCTATGTCTCTAGGCAGGATATAGAATCTGCATGTAGTCAAGTTACGCAATCTTTACGGAAAGCAAAAGGTGAACCAAACAATGAACAAGATGAAACTGAAAAGGCTGATCTTGACGCAAATGAAAAGTATTCTCTTATAAACATTCCCGATGACATGTTGACTCCAGAACAGCTCAATGGAAAAAGGAAACAGTTGTCACTCAAATCTGTGGCTGACGGGAGACAGCGATTAAAAAAGAAGCACTATGAAGAGGAATTGGAACGAGAGAGAAAACAACAATTAGAGGAGGAGAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAGTTGCATGCAAGATACAAAGACCTTTCTGAAAAAGTTGACCAACATAAACGACTTAAGACAGATGGGGGACATACGAGTGAAAGTAATTGGTGGGATGGTGTTGGGCGGGGAGAAAGAGCGAATGCTGCTCAGAGGGAACGAATGCGCCTCTTGTCGACTGCAGCTTTTGATAGTGACATGGGTGAGGATACATTTGGTGCCACGGATGAAGATTGGCAACTGTACAAATTGATGAACAAAGATTATATTGATGATGATGATGATGGACCCGACGAGGATGAGGCAGAGCTGGCCCGCATCTCCTCCAGGCTCCAGGACTTGGATCCAACATTTATACCCAATTTGGAAGTCGGTACCTTTCAACCTGCTGAGGTGCCACGTTTTCGTCCTCTGACCAAAGAAGATTTTCAGATTGTTCTTGGGGTTGAAAGATTCAGATGCCCTGAATTGTTGTTTAATCCAAATTGGATTGGGATTGATCAGGGAGGATTAGACGAGATGGCTGGGGTCTCACTAAAGAGACTACCATGCAAGGATGAAGGCTTGGAAGACAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAATTGAACGCCTTGAAGCTCGAATTCGGATGATTAGACCATGTGGTGCACCTATAAACATTGTTAGAGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCTGCTTCCTACGCGTCAGCCTCACAGTTCCTTAAGCAAACTTTCAGTAGACTGGACTACTATGAAAAAGGTGAAGACTGGCTTCGCGGTTATCAACTGCAATATACGTTATAA 2127 0.4396 MPFVSKIDRQSDFNDFSSQTPIVIDNGASYLRIGWAGESEPRVIFRNIVLRPRHKVTGETVTVVGDPDPALLKYFDCTRSGPCSAFDNNVVYQFETMEYIDHPVLITECVCNPVESRCKMAELLFETYGVPSIAFGVDIAFSYKYNQQQGVCAKDGLALCPGFTATHVIPFVDGEPVYKGCCRTNIGGFHVTDYLKQLLSLKYPYHSARFTLEKVEDLKMEHCYIAPDYVSEARLFQEGAKEAEEITKYWQLPWVPPPTEEPPSEEEVARKAAIKEKQGQRLREMAEAKKSSKINELENELHGLEFLSHQLEQVDETDVPSFLAETGYVSRQDIESACSQVTQSLRKAKGEPNNEQDETEKADLDANEKYSLINIPDDMLTPEQLNGKRKQLSLKSVADGRQRLKKKHYEEELERERKQQLEEEKRLENPELYLEQLHARYKDLSEKVDQHKRLKTDGGHTSESNWWDGVGRGERANAAQRERMRLLSTAAFDSDMGEDTFGATDEDWQLYKLMNKDYIDDDDDGPDEDEAELARISSRLQDLDPTFIPNLEVGTFQPAEVPRFRPLTKEDFQIVLGVERFRCPELLFNPNWIGIDQGGLDEMAGVSLKRLPCKDEGLEDRLTSSILVTGGSSLFPGIIERLEARIRMIRPCGAPINIVRALDPVMDAWRGAASYASASQFLKQTFSRLDYYEKGEDWLRGYQLQYTL* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1344 708 Gene3D Actin; Chain A, domain 4 571 597 - -
Apr9g1344 708 SUPERFAMILY Actin-like ATPase domain 155 700 IPR043129 -
Apr9g1344 708 Gene3D Actin; Chain A, domain 4 192 245 - -
Apr9g1344 708 MobiDBLite consensus disorder prediction 350 364 - -
Apr9g1344 708 CDD NBD_sugar-kinase_HSP70_actin 22 187 - -
Apr9g1344 708 SMART actin_3 19 704 IPR004000 -
Apr9g1344 708 Coils Coil 404 430 - -
Apr9g1344 708 SUPERFAMILY Actin-like ATPase domain 19 143 IPR043129 -
Apr9g1344 708 Pfam Actin 20 253 IPR004000 -
Apr9g1344 708 Pfam Actin 573 699 IPR004000 -
Apr9g1344 708 Coils Coil 434 454 - -
Apr9g1344 708 Coils Coil 294 314 - -
Apr9g1344 708 Gene3D - 137 191 - -
Apr9g1344 708 Gene3D - 22 135 - -
Apr9g1344 708 PANTHER ACTIN-RELATED PROTEIN 5 18 700 IPR027664 -
Apr9g1344 708 Gene3D Actin; Chain A, domain 2 49 77 - -
Apr9g1344 708 Gene3D - 668 696 - -
Apr9g1344 708 Gene3D - 598 667 - -
Apr9g1344 708 MobiDBLite consensus disorder prediction 345 364 - -
Apr9g1344 708 PANTHER ACTIN 18 700 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1344 Apr-Chr9 23029068 23034754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1344 574 695 Miscellaneous Gene Families AT2G42100 32.787 3.72e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1344 K11672 - gmx:100804305 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1344 9 23029068 23034754 Apr9g1344 9 23029068 23034754 ECH
Apr10g2028 10 33111961 33117184 Apr9g1344 9 23029068 23034754 PCT