Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2028 ATGCCTTTCATATCCAAAATTCAGCGCCAATCTGATTACAGTCTCTTCGGTTCCGCCACTCCCCTCGTGATCGACAATGGCGCCTCCTATTTTCGTATTGGATGGGCTGGAGAGACTGAACCTCGTGTTGTTTTCCGCAACATTGTGCAAAGGCCACGCCACAAAGCCACTGGAGAAACTGTCACCATTGTTGGTGACCATGATCCAGCATTATTGAAATACTTTGATTGCACTCGCTCTGGACCGCGCTCAGCATTTGACAGCAATGTTGTGTACCAGTTTGAAATAATGGAATATATTCTGGACTTTGGATTTGATCGGATGGGTGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCTGTTCAGTCTCGTAGCAAAATGGGAGAACTTCTTTTTGAGACTTACGGAGTTCCATCTATAGCCTTTGGTGTTGATGCAGCATTCAGCTATAAATATAATCAACAACTAGGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCGGGGTTCACTACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCTGTTTATAAAGGATGCTGCCGCACTAATATTGGTGGATTCCATGTGACTGATCATTTAAAGCAACTTCTTTCACTTAAATATCCTTACCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTAAAGATGGAACATTGTTATATTGCACCGGATTATGCTTCTGAAGCTCGGTTGTTTCAGAAAGGAGCTAAGGAGGCTGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCTCCAACAGAGGAACCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAGACAAGGTCAAAGATTACGAGAAATGGCTGAGGCAAAGAGATCATCTAGAATAAATGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTTTACAACAGCTTGAACAAGTTGACGAGAGTGATGTTCCATCTTTTCTAGGGGAGACTGGCTATGTCTCTAGGCAAGAGATAGAATCTGCCCGTCTTAAAGTTATGCAATCCTTACGGAAAGCAAAAGGTGACCCAAGGAGTGAACAACCTGAAACTGAAAAGGCTGACCCTGCCAGTAATGAGAAGTACTCTCTTATAAACATACCTGATGATATGCTGACCCCAGATCAGCTCATTGAAAAGAAGAAACAGTTGTCACTTAAATCCATGTCTGAAGGGCGGCAAAGACTAAAGCAAAAGCGTTACGAGGAGGAATTGGAGCGAGAAAGGAAACAACAGCTAGAGGAGGAAAAACGCCTGGAGAACCCAGAGCTTTACTTGGAGCAGTTGCATGTTAGATACAAAGACCTTTTGGAGAGAGTTGACCAACGAAAACGGCTCAAGACAAATGGAGGCCATACTAATGGAAATAATTTCTCCACTGGCATTGGTCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGAATGCGCCTCTTGACAACTGCAGCCTTTGATCGTGGCAAGGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGCAACTATACAAGTTGATGAGCAAAGATAATGATGATGATGATGAGGGACCAGATGAGGATGACGCAGAGCTAGCTCGCATCTCTTCAAGGCTACAGGACTTGGATCCAACATTTGTGCCCAAGTTAGAAACAGGTACCTCTCAACCTGCTGAGGTGCCACGTGTCCGTTCTCTCACCAAAGAAGATTTTCAGATTGTGTTTGGGGTTGAAAGGTTTAGATGCCCTGAACTTTTGTTCAATCCCAACTGGATTGGGGTGGATCAGGTAGGACTAGATGAGATGGCCGGGGTCTCAATAAGAAGGTTATCATGTAAGGATGAAAGCCTGGAAGGGAGACTCACTAACTCCATACTTGTGACTGGTGGAAGTTCTCTTTTCCCTGGCATCGTCGAACGTCTTGAAGCCGGAATTCGGATGATTAGACCCTGTGGATCACCTATAAAAATAGTTAGAGCACTGGATCCAGTTATGGATGCATGGCGTGGTGCTGCTGCCTATGCATCAGCCCCAGAATTCCATACACAAACTTTCAGTAAGATGGATTATTATGAAAAGGGTGAAGATTGGCTTCGCAGTTATCAACTGAAATATTCATTGTAA 2169 0.4408 MPFISKIQRQSDYSLFGSATPLVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRMGATGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQLGVCDKDGLAMCPGFTTTHVIPFVDGEPVYKGCCRTNIGGFHVTDHLKQLLSLKYPYHMARFTWEKVEDLKMEHCYIAPDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINELENELHGLEFLLQQLEQVDESDVPSFLGETGYVSRQEIESARLKVMQSLRKAKGDPRSEQPETEKADPASNEKYSLINIPDDMLTPDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLHVRYKDLLERVDQRKRLKTNGGHTNGNNFSTGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDNDDDDEGPDEDDAELARISSRLQDLDPTFVPKLETGTSQPAEVPRVRSLTKEDFQIVFGVERFRCPELLFNPNWIGVDQVGLDEMAGVSIRRLSCKDESLEGRLTNSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAAAYASAPEFHTQTFSKMDYYEKGEDWLRSYQLKYSL* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2028 722 PANTHER ACTIN 13 714 IPR004000 -
Apr10g2028 722 SUPERFAMILY Actin-like ATPase domain 19 159 IPR043129 -
Apr10g2028 722 Gene3D - 587 677 - -
Apr10g2028 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Apr10g2028 722 Gene3D Actin; Chain A, domain 4 201 284 - -
Apr10g2028 722 Gene3D - 18 169 - -
Apr10g2028 722 Coils Coil 419 445 - -
Apr10g2028 722 SMART actin_3 19 718 IPR004000 -
Apr10g2028 722 MobiDBLite consensus disorder prediction 359 380 - -
Apr10g2028 722 MobiDBLite consensus disorder prediction 359 385 - -
Apr10g2028 722 Coils Coil 309 329 - -
Apr10g2028 722 PANTHER ACTIN-RELATED PROTEIN 5 13 714 IPR027664 -
Apr10g2028 722 Pfam Actin 587 714 IPR004000 -
Apr10g2028 722 Pfam Actin 20 268 IPR004000 -
Apr10g2028 722 SUPERFAMILY Actin-like ATPase domain 170 714 IPR043129 -
Apr10g2028 722 MobiDBLite consensus disorder prediction 406 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2028 Apr-Chr10 33111961 33117184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2028 588 709 Miscellaneous Gene Families AT3G53750 34.426 3.03e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2028 K11672 - gmx:100808396 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2028 10 33111961 33117184 Apr10g2028 10 33111961 33117184 ECH
Apr10g2028 10 33111961 33117184 Apr9g1344 9 23029068 23034754 PCT