Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1340 ATGGCTCAATGCTCTAACAAGGATAACGGTACAAGTGCATCTCAATTAAGTTGGTGGTATGTAGATATATCTTATCAAGAACTCAAAAAGGGAAGTTACAAAGTGAAAAGCTCGGATGAGACATTCATTTGTCCATATTGCCCTGAGAGAAAACAGGATTATAAGTACAGGGAACTCCTTAATCATGCTTCTGGGGTTGGTCGCAGTAGTTCAGAAAAGAGAAGTGCTAAAGAGAAGGCTAATCATCTGGCTTTATTGAAATATCTGGAAAAGGATCTTATGTGTATGGATGGCCCATCAAAAACTGAAGATAAAGGTGCCAAATTATTAAGCCCAAGAGAAACTGTAATGCCTCACTGCTCTAACACTGATACTGGTATAAGTGCATCTCAAATAAGTTGGTGGTATATAGATACATCTTATGAAGAGCTCAAAAAGGGAAGTCACAATGTGAAAGCCTCAGATGTGACTTTCATCTGTCCTTACTGCCCAAGGAGAAAACAGGACTATGTATACAGGGAACTCCTAGAACATGCTTATATGGTGGGTCAGAGTAGTTCAGAAAAGAGAAGTGCTAGAGAGAGGGCCAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATTATTATGAATAGTCCATCCAAACCTGTAGATAAAGGCCCCAATATGTTAAGCCTAGGACAACCTGTAATGGCTCAATGCTCTAACAAGGATACTGGTATAAGTGCATCTCAAGTAAATTGGTGGTATGTAGATAAATTTTACAACGAACTCAGAAAAGGAAGTCTCATTGTGCAAATCTCAGATGAGACTTTCTCGTGTCCATACTGCCCTAAAAAGAGAAAGCAGGATTATTTCTACAGGGAACTCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGTTCCCAAAAGAGAAGTGTCCGAGAGAAGGCTACTCATCTGGCTTTAGCAAAATATTTGAAAAATGATCTTATGATTATGAATGCTCCATCAAAACCTGTAAGTGAAGGTGATCCCCCTGTTAATAGGGTGGGTCAGAGTAGTTCACAAGAGAGAAGTGTCAGAGAGGAGGCTACTCATTTGACTTCAGCAAAATACTTGAAAAGGGATCTAACAAATGTGAGTGGTCTATCAAAACCTGTAAATGAAGGAACCACAATATTAAGCCCAGGAGAAATTGTGATGGGTCACTGCTCTAACCAAGATACCGATGTATGTTCATATCAAATTGGGTGGTATGTAGATAAATCTTATGAAGAACTCAAAAAGGGAAGTAACAATGTGAAAACCTCTGATGAGACTTTCACATGCCCTTACTGCCCTAATAAAAAGATAAAACGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCGGAGTAGATCACAAAAAAGAAGTGTCATTGAAAAAGCTAATCATCTGGCTTTAGTGAAATATTTGAAAAAGGATCTTATGAATGTGGGTGGTCCATCAAACCCTATCGATCAAGGCACCATAACAAAAAGTCCAACAGAAACTGTAATGGGTCACTGCTCCCACACGGATACTAATACAAGGACATCTCAAATAAGTGGGTGGTATCTATATAAATCCTATGAAGAACTCAAAAAGGGATTTCATAATGTGAAAACCTCAGAAGAGACTTTTGCATGTCCATACTGTCCTAATAAAAAGAGAAAACGGGATTATGCATACAGGGAAATCCTTGAACATGCTTCTGGGGTAGGTCGGAGTAGATCACAAAAGAGAAGTACCATTGAAAAGGCTAATCATCTGGCTTTAATGAAATATTTGGAGAAGGATCTTATGAATGTGGATGATCCACCAAAAGCTGCACTTGAAGGTACTCCTCCTTTCAATTCTGAGAAACAGTTTGTGTGGCCATGGACTGGGATTGTGGTTAATATTCCCACTAGCCAGACAGAAGATGGACGATATGTTGGAGAGAGTGGTTCCAAGCTGAGGGATGAATACCTAAGCAGGGGATTTAATCTGTGTAAAGTTCGCACTCTTTCAAATATCTGGGGTCACTCTGGAACTGCAGTAGTGGAATTCAATAAAAATTGGTCAGGCTTAGATAATGCTCTGGCATTTGAAAGAGCATATGAATTAGATCATCATGGGAAAAAAGACTGGTTTGCTAATACTGACCAGAAGTATGGTGTTTTTGCATGGGTTGCCCGAGCTGATGACTACAAGATGAACAATATCATTGGAGAACAACTGCAGAAGATGGGAGATATCAAAACGATACCTGAACTTATGGAAGAAGAAGCTCGAAAGCAAGATAAACTTGTGTGCAGTTTAAATAATATTCTTCAGGTCAAGAAGAAGCAATTAAAGGAGATTGAAGCAAAATACAACAATACTTCACTTCGCATGGACAATGTAATGGGGGAAATAAATAAGCTCACTCAAAATCACAATCAGGAGATGAAGAAAACACAGTCAAGTGCAATTCAACACTTTCAGAGTATTTTTAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAGAGAGAGCTTGAGTTGCGGAGAATTGAATTGGAAAAACGTGAGGCGCATAATGAAAGTGAAAGAAAAAAGTTGGAAAAAGAGATTAAGGAGAATGCAATGAAAAATAGCTCTCTTGAAATGGCTGTTCAGGAGCAACAGAAAGCTGGTGAATATGTCTTGAAAATGGCTGCAGATCAAAAGTGGCAAAAAGAACAACTCCATGCTAAAATCATCCAGCTTGAAAAACAACTGGATGTGAAACAAAAAGTAGAATTAGAGATTCAACAACTAAAAGGAAAATTAAATGTCATGAAGCGCATGAAAGAGGATGGAGACTCAGAAGTTCTGAATAAGGTGGATGTTCTACATAAGGATTTAAGAGAAAAAGAACTGTCACTACGAGACTTGGATGCGCTGAATCAAACACTGATTATTAAAGAGCGTAAGAGCAATGATGAGCTACAAGAAGCTCGAAAAGAATTGATTAATGGCATTAAAGAGATATCTTGTCATGCTAATATTGGTGTGAAGAGAATGGGGGAACTTGATATTAGACCATTCCTCGAAGCTATGAAAAAAATTTATAATGAGGAGGATGCAGAAGATAGAGCTTCAGAACTGTGTTCATTGTGGGAAGAGTATATCAAAGACCCAGACTGGCATCCATTTAAAATTACCATAATTGAAGGGCAACATCAGGAAATCATAGACAACGAAGATGAAAAACTCAAAGGACTGAAAAACGAGATGGGTGAAGAAGTCTACAAAGCTGTAGTGACAGCTTTGACGGAGATCAATACATATAATCCAAGTGGGCGGTACATAACCTCAGAATTATGGAATTATGAAGAGGGAAAGAGAGCTACTTTGCAAGGAGGAGTAAATTTTTTATTGATGCAATGGAAACTACATAAACAAAAAAGGGGATTGATGTGA 3456 0.3854 MAQCSNKDNGTSASQLSWWYVDISYQELKKGSYKVKSSDETFICPYCPERKQDYKYRELLNHASGVGRSSSEKRSAKEKANHLALLKYLEKDLMCMDGPSKTEDKGAKLLSPRETVMPHCSNTDTGISASQISWWYIDTSYEELKKGSHNVKASDVTFICPYCPRRKQDYVYRELLEHAYMVGQSSSEKRSARERANHLALVKYLEKDLIIMNSPSKPVDKGPNMLSLGQPVMAQCSNKDTGISASQVNWWYVDKFYNELRKGSLIVQISDETFSCPYCPKKRKQDYFYRELLEHASGVGQSSSQKRSVREKATHLALAKYLKNDLMIMNAPSKPVSEGDPPVNRVGQSSSQERSVREEATHLTSAKYLKRDLTNVSGLSKPVNEGTTILSPGEIVMGHCSNQDTDVCSYQIGWYVDKSYEELKKGSNNVKTSDETFTCPYCPNKKIKRDYVYREILEHASGVGRSRSQKRSVIEKANHLALVKYLKKDLMNVGGPSNPIDQGTITKSPTETVMGHCSHTDTNTRTSQISGWYLYKSYEELKKGFHNVKTSEETFACPYCPNKKRKRDYAYREILEHASGVGRSRSQKRSTIEKANHLALMKYLEKDLMNVDDPPKAALEGTPPFNSEKQFVWPWTGIVVNIPTSQTEDGRYVGESGSKLRDEYLSRGFNLCKVRTLSNIWGHSGTAVVEFNKNWSGLDNALAFERAYELDHHGKKDWFANTDQKYGVFAWVARADDYKMNNIIGEQLQKMGDIKTIPELMEEEARKQDKLVCSLNNILQVKKKQLKEIEAKYNNTSLRMDNVMGEINKLTQNHNQEMKKTQSSAIQHFQSIFNGHERLKLQLESQKRELELRRIELEKREAHNESERKKLEKEIKENAMKNSSLEMAVQEQQKAGEYVLKMAADQKWQKEQLHAKIIQLEKQLDVKQKVELEIQQLKGKLNVMKRMKEDGDSEVLNKVDVLHKDLREKELSLRDLDALNQTLIIKERKSNDELQEARKELINGIKEISCHANIGVKRMGELDIRPFLEAMKKIYNEEDAEDRASELCSLWEEYIKDPDWHPFKITIIEGQHQEIIDNEDEKLKGLKNEMGEEVYKAVVTALTEINTYNPSGRYITSELWNYEEGKRATLQGGVNFLLMQWKLHKQKRGLM* 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1340 1151 Coils Coil 980 1000 - -
Apr9g1340 1151 Coils Coil 779 820 - -
Apr9g1340 1151 MobiDBLite consensus disorder prediction 333 361 - -
Apr9g1340 1151 Gene3D XS domain 625 794 IPR038588 -
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 50 108 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 282 344 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 166 223 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 564 1150 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 117 166 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 448 502 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 514 563 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 346 386 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 233 282 IPR045177 GO:0080188
Apr9g1340 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 397 446 IPR045177 GO:0080188
Apr9g1340 1151 Coils Coil 903 947 - -
Apr9g1340 1151 CDD RRM_like_XS 631 738 IPR005380 GO:0031047
Apr9g1340 1151 Pfam XH domain 1017 1147 IPR005379 -
Apr9g1340 1151 Coils Coil 833 888 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 514 563 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 233 282 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 282 344 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 397 446 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 346 386 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 564 1150 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 117 166 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 166 223 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 108 - -
Apr9g1340 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 448 502 - -
Apr9g1340 1151 Pfam XS domain 628 739 IPR005380 GO:0031047
Apr9g1340 1151 Pfam XS zinc finger domain 276 319 IPR005381 GO:0031047
Apr9g1340 1151 Pfam XS zinc finger domain 44 85 IPR005381 GO:0031047
Apr9g1340 1151 Pfam XS zinc finger domain 557 600 IPR005381 GO:0031047
Apr9g1340 1151 Pfam XS zinc finger domain 160 202 IPR005381 GO:0031047
Apr9g1340 1151 Pfam XS zinc finger domain 439 483 IPR005381 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1340 Apr-Chr9 23000291 23008488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1340 - - gmx:100790814 1901.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1340 9 23000291 23008488 Apr10g2024 10 33080761 33083856 ECH
Apr9g1340 9 23000291 23008488 Apr9g1340 9 23000291 23008488 ECH
Apr10g2024 10 33080761 33083856 Apr9g1340 9 23000291 23008488 PCT