Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1320 ATGGCTGATGATCCTCAAGATGTGGCTGACAGAGAGCGCATTTTCAAGAGTTTCGATGCCAACGGCGATGGCCAAATCTCTTCATCAGAGCTTGGAGAAGCACTGAAAACACTTGGATCAGTGACAGCAGAAGAAGTGCAAAGAATGATGGAAGAGATTGACACAGATGGGGATGGCTACATTTCCTATGAGGAGTTCACAGAATTTGCCAGAGCCAACCGTGGCCTAGTGAAGGATGTTGCCAAGATTTTTTAA 255 0.4588 MADDPQDVADRERIFKSFDANGDGQISSSELGEALKTLGSVTAEEVQRMMEEIDTDGDGYISYEEFTEFARANRGLVKDVAKIF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1320 84 Pfam EF-hand domain pair 13 71 IPR002048 GO:0005509
Apr9g1320 84 SUPERFAMILY EF-hand 9 70 IPR011992 -
Apr9g1320 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Apr9g1320 84 SMART efh_1 45 73 IPR002048 GO:0005509
Apr9g1320 84 SMART efh_1 10 38 IPR002048 GO:0005509
Apr9g1320 84 PRINTS Recoverin family signature 14 35 - -
Apr9g1320 84 PRINTS Recoverin family signature 59 77 - -
Apr9g1320 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 40 IPR002048 GO:0005509
Apr9g1320 84 PANTHER TROPONIN 1 84 - -
Apr9g1320 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Apr9g1320 84 CDD EFh 12 71 IPR002048 GO:0005509
Apr9g1320 84 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Apr9g1320 84 Gene3D - 2 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1320 Apr-Chr9 22855237 22855491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1320 4 84 EF-hand Containing Proteins AT3G03430 71.605 1.35e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1320 K13448 - gmx:100806709 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2008 10 32973089 32973343 Apr9g1320 9 22855237 22855491 PCT