Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2008 ATGGCTGATGATCCACAAGATGTAGCTGATAGGGATCGCATTTTCAAACATTTTGATGCCAATGGTGATGGCAAAATCTCTTCACAAGAGCTTGCTGAGTCACTTAAAACACTTGGATCAGTGACCGAGGACGAAGTGCTAAGGATGATGGCGGAGATTGATACAGATGGTGATGGCTTCATTTCATACGAAGAGTTCACAGAGTTTGCAAGAGCTAACCGTGGCCTAGTGAGGGATGTTGCCAAGATTTTTTAA 255 0.4353 MADDPQDVADRDRIFKHFDANGDGKISSQELAESLKTLGSVTEDEVLRMMAEIDTDGDGFISYEEFTEFARANRGLVRDVAKIF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2008 84 CDD EFh 13 71 IPR002048 GO:0005509
Apr10g2008 84 Gene3D - 2 84 - -
Apr10g2008 84 PANTHER TROPONIN 1 84 - -
Apr10g2008 84 ProSiteProfiles EF-hand calcium-binding domain profile. 43 76 IPR002048 GO:0005509
Apr10g2008 84 SMART efh_1 10 38 IPR002048 GO:0005509
Apr10g2008 84 SMART efh_1 45 73 IPR002048 GO:0005509
Apr10g2008 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Apr10g2008 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Apr10g2008 84 Pfam EF-hand domain pair 13 71 IPR002048 GO:0005509
Apr10g2008 84 SUPERFAMILY EF-hand 12 70 IPR011992 -
Apr10g2008 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Apr10g2008 84 PANTHER POLCALCIN NIC T 1 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2008 Apr-Chr10 32973089 32973343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2008 4 84 EF-hand Containing Proteins AT5G17480 75.309 6.57e-39 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2008 K13448 - csv:101214153 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2008 10 32973089 32973343 Apr9g1320 9 22855237 22855491 PCT