Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1318 ATGGATGATGAGGTGCGCAAGATCTTCAGTAAGTTTGACAAAAACGGCGACGGAAAGATCTCGTGTTCGGAGTTGAAGGACATGCTTGTTACTCTCGGATCCAAAACGACTTCTGAGGAGGTGAAACGCATGATGGAGGAGATTGACCAAAACGGCGACGGTTACATTGACCTCAAGGAGTTCGCCGACTTTCATTGCAATGACGTCGGACATGAAGACTCCAAGGAGCTCCGTGACGCGTTTGATCTCTACGATCTCGATAAGAACGGCCTCATCTCCGCGAAGGAGTTGCACGACGTGCTCAGAAAGCTCGGCGAGAAGTGCTCCCTCAGCGACTGTCGGAGGATGATCAGCAACGTCGACGCAGATGGCGACGGCAACGTCAACTTCGAGGAGTTCAAAAAGATGATGGCTCGCTCTTAG 423 0.5154 MDDEVRKIFSKFDKNGDGKISCSELKDMLVTLGSKTTSEEVKRMMEEIDQNGDGYIDLKEFADFHCNDVGHEDSKELRDAFDLYDLDKNGLISAKELHDVLRKLGEKCSLSDCRRMISNVDADGDGNVNFEEFKKMMARS* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1318 140 SMART efh_1 40 68 IPR002048 GO:0005509
Apr9g1318 140 SMART efh_1 112 140 IPR002048 GO:0005509
Apr9g1318 140 SMART efh_1 4 32 IPR002048 GO:0005509
Apr9g1318 140 SMART efh_1 76 104 IPR002048 GO:0005509
Apr9g1318 140 Gene3D - 69 140 - -
Apr9g1318 140 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Apr9g1318 140 CDD EFh 76 138 IPR002048 GO:0005509
Apr9g1318 140 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Apr9g1318 140 ProSiteProfiles EF-hand calcium-binding domain profile. 108 140 IPR002048 GO:0005509
Apr9g1318 140 SUPERFAMILY EF-hand 3 138 IPR011992 -
Apr9g1318 140 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Apr9g1318 140 CDD EFh 4 65 IPR002048 GO:0005509
Apr9g1318 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 140 - -
Apr9g1318 140 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Apr9g1318 140 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Apr9g1318 140 Pfam EF-hand domain pair 76 137 IPR002048 GO:0005509
Apr9g1318 140 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Apr9g1318 140 Gene3D - 1 68 - -
Apr9g1318 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 140 - -
Apr9g1318 140 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Apr9g1318 140 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1318 Apr-Chr9 22839528 22840937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1318 3 138 EF-hand Containing Proteins AT1G18210 56.618 2.13e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1318 K13448 - gmx:100796491 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2007 10 32964857 32969129 Apr9g1318 9 22839528 22840937 PCT