Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2007 ATGGACGAAGAGGTGCGCAAGATCTTCAACAAGTTCGATAAGAACGGCGACGGCAAGATCTCGTGCACGGAGCTGAAGGAGATGATGGCGGCGTTGGGATCCAAAACGACGTCGGAGGAGGTGAGGCGCATGATGGCGGAGCTTGACCAGAACGGCGACGGTTACATTGATCTGAAGGAGTTCGGCGAGTTCCATTGCGCCGGCGGCGACAACAGAGAGCTCCGGGAAGCGTTTGAGATGTACGATCTGGACAAGAACGGGTTGATTTCGGCGAAGGAACTGCACTCGGTGATGCGGAGGTTGGGGGAGAAATGCTCGCTGAGTGATTGCCGGAGGATGATTGGAAACGTGGACGCCGACGGCGACGGCAACGTCAATTTCGAAGAGTTCAAGAAGATGATGACTCGCTCGTAG 414 0.558 MDEEVRKIFNKFDKNGDGKISCTELKEMMAALGSKTTSEEVRRMMAELDQNGDGYIDLKEFGEFHCAGGDNRELREAFEMYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGNVNFEEFKKMMTRS* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2007 137 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Apr10g2007 137 CDD EFh 4 61 IPR002048 GO:0005509
Apr10g2007 137 Gene3D - 70 137 - -
Apr10g2007 137 ProSiteProfiles EF-hand calcium-binding domain profile. 105 137 IPR002048 GO:0005509
Apr10g2007 137 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Apr10g2007 137 SMART efh_1 73 101 IPR002048 GO:0005509
Apr10g2007 137 SMART efh_1 109 137 IPR002048 GO:0005509
Apr10g2007 137 SMART efh_1 4 32 IPR002048 GO:0005509
Apr10g2007 137 SMART efh_1 40 68 IPR002048 GO:0005509
Apr10g2007 137 SUPERFAMILY EF-hand 3 136 IPR011992 -
Apr10g2007 137 Gene3D - 1 68 - -
Apr10g2007 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Apr10g2007 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Apr10g2007 137 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 137 - -
Apr10g2007 137 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Apr10g2007 137 CDD EFh 73 135 IPR002048 GO:0005509
Apr10g2007 137 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 137 - -
Apr10g2007 137 Pfam EF-hand domain pair 73 135 IPR002048 GO:0005509
Apr10g2007 137 Pfam EF-hand domain pair 3 62 IPR002048 GO:0005509
Apr10g2007 137 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2007 Apr-Chr10 32964857 32969129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2007 3 135 EF-hand Containing Proteins AT1G18210 57.143 1.40e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2007 K13448 - gmx:100806813 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2007 10 32964857 32969129 Apr9g1318 9 22839528 22840937 PCT