Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1312 ATGGCTACTGAAGAGGTTAACAAACCTCCATCGCTTCCTCCATACCCTGAGATGATAATGAAAGCACTGGAAGCCCTGAATGAACCCAGCGGATCTAACAAATCAGCGATATCTAAGTACATAGAATCTACCTATGGTGAGTTACCAGAAGGCCACTCAACCCTTTTGTCACATCACCTCAACAAGATGAAAGATGGTGGAGAACTTGTGTTCTGGAAGAACAACTACATGAAACCTGACCCAAATGCCCCACCAAGGAGAGGCCGTGGAAGGCCCCCAAAACCAAAGGTTCCTTTGCCTCCAGGCACTGTTCTGTCCCCTCCAAGGCCAAGGGGTCGCCCCCCAAAGGACCCGAATGCCCCACCAAAGCCACCAAAGGCTAAGGTGTCCACTGGAAGTGGCAGGCCTAGGGGTAGGCCAAAGAAGATTGCTCGGTCACCGGCGGTGGCGGCTCCTGCCACCGTCTCTAGTGGAAGGCCAAGAGGTAGACCTCCCAAGGTGAAGCCTCAATTGACAGAAGTCAGTGTTGAATCATAG 537 0.5214 MATEEVNKPPSLPPYPEMIMKALEALNEPSGSNKSAISKYIESTYGELPEGHSTLLSHHLNKMKDGGELVFWKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNAPPKPPKAKVSTGSGRPRGRPKKIARSPAVAAPATVSSGRPRGRPPKVKPQLTEVSVES* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1312 178 Gene3D - 7 85 IPR036388 -
Apr9g1312 178 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Apr9g1312 178 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr9g1312 178 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr9g1312 178 MobiDBLite consensus disorder prediction 94 125 - -
Apr9g1312 178 PANTHER HMG-Y-RELATED PROTEIN A 1 174 IPR031059 GO:0003677|GO:0005634
Apr9g1312 178 MobiDBLite consensus disorder prediction 73 178 - -
Apr9g1312 178 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Apr9g1312 178 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Apr9g1312 178 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Apr9g1312 178 PANTHER HISTONE H1 1 174 - -
Apr9g1312 178 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Apr9g1312 178 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Apr9g1312 178 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Apr9g1312 178 SMART AT_hook_2 158 170 IPR017956 GO:0003677
Apr9g1312 178 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr9g1312 178 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr9g1312 178 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr9g1312 178 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr9g1312 178 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1312 Apr-Chr9 22778865 22781082 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1312 - - gmx:100793697 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1999 10 32891942 32893306 Apr9g1312 9 22778865 22781082 PCT