Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1999 ATGGCCGCTGGAGAAGTTACTAATAAACCCCTTTCCCTTCCTCCGTACCCCGAGGCAATAGAAGCACTGAACGAGGAGAATGGTTCAAACAAGTCTTCAATATCAAAGTACGTAGAATCAACGTACGGTGGATTGCCTCAGGGCCACAAGGCACTGCTCAATGTGCACCTTGGAAAAATGAGAGACAGTGGGTTGTTAGTGTTTTGGAAAAATAATTACTCAAAGCGTGACCAAAACGCGCCACCGCGGCGGGGCCGTGGCAGGCCACCCAAGCCCAAAGACCCTCTGCCTCCGGGTACTACGTTGCCACCTCCCCGGCCCAGAGGCCGCCCCCGAAAGGGCCCAAATGACCCACCAAGGCCCCCCAAAGCTAAGTTCTCAACTGGAAGTGGGAGGCCCAGAGGTAGGCCCAGGAAGATGGCCCGACCCGCCGGAGGATTTGGTGGAGCACCGCCTTCCAAGGCGGCCAGTGGGAGGCCCAGAGGTAGGCCTCCCAAGGTGAAGCCCACGTTGACAGAGATTAATGCTTAA 531 0.565 MAAGEVTNKPLSLPPYPEAIEALNEENGSNKSSISKYVESTYGGLPQGHKALLNVHLGKMRDSGLLVFWKNNYSKRDQNAPPRRGRGRPPKPKDPLPPGTTLPPPRPRGRPRKGPNDPPRPPKAKFSTGSGRPRGRPRKMARPAGGFGGAPPSKAASGRPRGRPPKVKPTLTEINA* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1999 176 MobiDBLite consensus disorder prediction 73 176 - -
Apr10g1999 176 Pfam linker histone H1 and H5 family 18 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr10g1999 176 MobiDBLite consensus disorder prediction 77 91 - -
Apr10g1999 176 Gene3D - 17 83 IPR036388 -
Apr10g1999 176 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Apr10g1999 176 PRINTS AT-hook-like domain signature 103 114 IPR017956 GO:0003677
Apr10g1999 176 PRINTS AT-hook-like domain signature 129 139 IPR017956 GO:0003677
Apr10g1999 176 PRINTS High mobility group protein (HMGY) signature 81 93 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr10g1999 176 PRINTS High mobility group protein (HMGY) signature 96 107 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr10g1999 176 PRINTS High mobility group protein (HMGY) signature 107 118 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr10g1999 176 PRINTS High mobility group protein (HMGY) signature 120 139 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Apr10g1999 176 PANTHER HISTONE H1 1 173 - -
Apr10g1999 176 SMART h15plus2 10 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr10g1999 176 MobiDBLite consensus disorder prediction 92 109 - -
Apr10g1999 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 7 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr10g1999 176 PANTHER HMG-Y-RELATED PROTEIN A 1 173 IPR031059 GO:0003677|GO:0005634
Apr10g1999 176 SUPERFAMILY "Winged helix" DNA-binding domain 12 90 IPR036390 -
Apr10g1999 176 SMART AT_hook_2 158 170 IPR017956 GO:0003677
Apr10g1999 176 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Apr10g1999 176 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Apr10g1999 176 SMART AT_hook_2 83 95 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1999 Apr-Chr10 32891942 32893306 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1999 - - gmx:100803968 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1999 10 32891942 32893306 Apr9g1312 9 22778865 22781082 PCT