Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1062 ATGCCAATAGTGACATCTTGGAAGTTCCCTAGTTTCCTTGTTATTCTATGTACTTTCTTATCTTATTCTTTCTCTTCAATATTCACCATAACCAACAACTGCCCTTATACAATATGGCCTGGCACACTCTCCGGCTCCGGCTCGCCTCCACTTCCGACGACCGGATTCCAGCTGGACTCGGGGCAAATGATCAAACTTACTAGTGTTCCAGGGTGGTCAGGTAGGATATGGGCTAGGACTGGTTGCACATTTGATGCAACAGGAATTGGCAAGTGCCAAACAGGTGATTGTGGTGGAAGGCTGGAATGTGATGGAAATGGAGCAGCTCCTCCTACCTCTTTGTTTGAGATAACACTTGGTAAAGGCAATGAACAAGATTACTATGATGTCAGCATGGTAGATGGATACAATCTGCCACTTCTTGTTCAACCACGAGGTGTATATGGTAGTGGAGCCTGCAATGCCACCGGTTGTGTGACTGATATCAACAGAGGTTGCCCCAAAGAACTTCAAGTAGTTGGTGGAGATGGATACGAAGGTGGTGTAGTTGGGTGTAAGAGTGCATGCGAGGCATTTGGATCGGATCAGTACTGCTGCAGTGGAGAATTTGCCAACCCAACAACATGCCAACCTTCCTACTATTCCACCCTTTTCAAGCAGGCTTGTCCAAAAGCCTATAGCTATGCATTTGATGATGCCACCAGCACTTTCATTTGCAAAGCCTTTCAATATGACATTGTTTTTTGTCCCAACACCAACAGGATTAAAAGACCAAATGGTGCATTTCCTCCTCCACCACCATCATCATCATTTAGATGGCCCTATCAGAAGATTCAGTGGGTCCATTCTTCTTCTAATATTCTCTTACCCTTTCCAGTGACAATCTTTCTCTTGGTCGCCACTCTCTCTGTGTTTGCAGCAAGGACGCAGCCACTGATATGA 942 0.4554 MPIVTSWKFPSFLVILCTFLSYSFSSIFTITNNCPYTIWPGTLSGSGSPPLPTTGFQLDSGQMIKLTSVPGWSGRIWARTGCTFDATGIGKCQTGDCGGRLECDGNGAAPPTSLFEITLGKGNEQDYYDVSMVDGYNLPLLVQPRGVYGSGACNATGCVTDINRGCPKELQVVGGDGYEGGVVGCKSACEAFGSDQYCCSGEFANPTTCQPSYYSTLFKQACPKAYSYAFDDATSTFICKAFQYDIVFCPNTNRIKRPNGAFPPPPPSSSFRWPYQKIQWVHSSSNILLPFPVTIFLLVATLSVFAARTQPLI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1062 313 CDD TLP-PA 27 249 - -
Apr9g1062 313 Pfam Thaumatin family 32 250 IPR001938 -
Apr9g1062 313 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Apr9g1062 313 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Apr9g1062 313 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Apr9g1062 313 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Apr9g1062 313 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Apr9g1062 313 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Apr9g1062 313 ProSiteProfiles Thaumatin family profile. 25 250 IPR001938 -
Apr9g1062 313 SUPERFAMILY Osmotin, thaumatin-like protein 27 251 IPR037176 -
Apr9g1062 313 PIRSF PR5 1 288 IPR001938 -
Apr9g1062 313 SMART tha2 28 250 IPR001938 -
Apr9g1062 313 Gene3D Thaumatin 27 250 IPR037176 -
Apr9g1062 313 PANTHER OS03G0233200 PROTEIN 4 266 IPR001938 -
Apr9g1062 313 PANTHER THAUMATIN-LIKE PROTEIN 1B 4 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1062 Apr-Chr9 20019866 20022447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1062 12 251 Receptor kinase-like Gene Family AT5G38280 46.694 3.03e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1062 - - gmx:100805642 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1062 9 20019866 20022447 Apr1g0579 1 7062394 7063538 PCT