Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0921 ATGGCAACAAAGGCAAAGAACAACAAGGTGGGGAGTGAATTGGGTTGTGGTCTCATGGGGAGAATTCTCCAACTCAAAAACAACAAGCTGAGAAAAGCATCTGTTCACTCACTACCCTTGAAGGCTAGTGACAATGCAATGAATGATCATGGCAAAAGTGAACATAAAAAGTCACCAAATGATGAATCAAAGGTTCCACAAAGAATTCGAAACAATCAAAACCGAAGACAGTCAGATGCTGCCAGAAGCTCAACATCATCATCCACTAGCAGTTCAACTTCAACTCAAACAAAGGTTCAACAAAACAAGGACAAGAATTATGAGAGCAAGCCACACAGAGATCCCATTGGAACTTCTCTTGCACTTGCTAGGATAAGTACTAGTCATCAGAGAGACAATGTGAGTATCAAGTCCCCAAACAAAGACTTTGGTAACTTGAAACTCACCGGGAATTTGCTTGTGAATAACACCCCAAGAAGAAAGAGTGTGGAATACATGCCTAAAAATGCAGATTTGAACTCTGTGCCCAGTTCTTATAGCAATGCAAGCAAAGGGTTGATGGGGAATATCATGAGGAAGAACAGCAGCAGCAATGATTTTGCAAAATTTTTGAGTCCAAGACACAACAAAGTGGACCCTGAGCTGTTGAAGTCCGTCGGAAATGAAGCATACAAGCTAGGAAGATTTGAAGAAGCTTTGGCTTTGTATGACCGAGCAATTGCTCTTGATTCAAATAAGGCAACGTATCATTGCAACAAGAGTGCAGCTTTAATTGGCTTAGGAAGGCTTCAAGAAGCAATTTTTGAATGTGAGGAATCTATTAGGTTGGACCCTTCATATGTCAGAGCCCACAACCGTTTGGCAACAATATATTTCAGGTTGGGAGAAGCAGAAAAAGCACTGGATTGCAACCAGTCAACCTCATATGCTGATTCAATACTTTCTTTCCAAGCCAAGGCTCTTCAGAATCACCTTAACAAAATCATAGAAGCACGAAAAGTCAATGAATGGGGCGTCGTACTGAAGGAAACAGTGTCTGCAATATCCTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAGATTGAAGCCTTGCTGAAGCTCCTAAGATATCAAGAGGCGTATGCCATCTATGAGAAAATGCCAAAATATTCACTTGATTGGTGTAACAAGATATTCGGCTTGGCTCGCAGTGCGTACTTATTGATAATAGGCGCACAGGTTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTGGCTGAAGCTCAACAAGCAGCTAAAGTTGATCCAAGCAACAGAGAGGTGAATGCAGTGTTAAGGAGGGTTAGAGCAGTAACATCAGCTAGAGTGAGTGGAAACTTACTCTTCAAGGCAATAAAATTCATGGAAGCATGTGCTGTGTACAACGAAGGACTAGAGCATGATCCACACAACTCAGTTCTACTATGCAACAGAGCTGCATGTCGCTCTAAGCTTGGCCAATATGAAAAAGCGATTGAGGATTGTAATGCAGCACTTATGGTTCAACCATGTTATAACAAAGCAAGGCTAAGGAGGGCAGATTGTAATGCCAAGTTGGAGAGGTGGGAAGCAGCTATTCAAGACTATGAAATGTTATTAAGAGAAAAGCCAGGGGATGAGGAAGTGGCGAGGGCCTTGTTTGAAGCTCAGCTGCAAGTCAAGATTCTGCACGGTGAAGATATTAAGGACTTGAAATTTGGTTCTAATTTGGTGTTCATCTCAAGTAATGATCGGTTCAGACATTATGTGACTTCACCTGGGATGGCTGTGGTGCTCTTTAGCAACAAGACAACCCGCAAGCAAGTGTTGCTAATGTTGGAAGAAACGAGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAGATTGAAGACCACCCCTACTTAGCAAAGTCAGAAGGTGTGAACTCTATCCCAATCTTCAGAATATACAAGAATGGATCAAGGGTTAAAGAAATTTCAAGCAACAACCATGAGTTGTTAGAAAGATCAATCAAATTGTATAGCAGCTGA 2037 0.4212 MATKAKNNKVGSELGCGLMGRILQLKNNKLRKASVHSLPLKASDNAMNDHGKSEHKKSPNDESKVPQRIRNNQNRRQSDAARSSTSSSTSSSTSTQTKVQQNKDKNYESKPHRDPIGTSLALARISTSHQRDNVSIKSPNKDFGNLKLTGNLLVNNTPRRKSVEYMPKNADLNSVPSSYSNASKGLMGNIMRKNSSSNDFAKFLSPRHNKVDPELLKSVGNEAYKLGRFEEALALYDRAIALDSNKATYHCNKSAALIGLGRLQEAIFECEESIRLDPSYVRAHNRLATIYFRLGEAEKALDCNQSTSYADSILSFQAKALQNHLNKIIEARKVNEWGVVLKETVSAISLGADSAPQVYALQIEALLKLLRYQEAYAIYEKMPKYSLDWCNKIFGLARSAYLLIIGAQVYLAAGRFEDAVAEAQQAAKVDPSNREVNAVLRRVRAVTSARVSGNLLFKAIKFMEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNAALMVQPCYNKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFEAQLQVKILHGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKTTRKQVLLMLEETSKRFPSVNFLKVEIEDHPYLAKSEGVNSIPIFRIYKNGSRVKEISSNNHELLERSIKLYSS* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0921 678 Pfam TPR repeat 220 255 - -
Apr9g0921 678 Pfam Tetratricopeptide repeat 482 511 IPR001440 GO:0005515
Apr9g0921 678 SUPERFAMILY Thioredoxin-like 569 671 IPR036249 -
Apr9g0921 678 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Apr9g0921 678 Pfam Thioredoxin 608 670 IPR013766 -
Apr9g0921 678 SUPERFAMILY TPR-like 213 435 IPR011990 GO:0005515
Apr9g0921 678 MobiDBLite consensus disorder prediction 34 116 - -
Apr9g0921 678 MobiDBLite consensus disorder prediction 65 102 - -
Apr9g0921 678 Gene3D Glutaredoxin 573 677 - -
Apr9g0921 678 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 676 IPR044534 -
Apr9g0921 678 Pfam Tetratricopeptide repeat 407 479 - -
Apr9g0921 678 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 676 - -
Apr9g0921 678 Coils Coil 513 540 - -
Apr9g0921 678 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Apr9g0921 678 Gene3D Tetratricopeptide repeat domain 212 564 IPR011990 GO:0005515
Apr9g0921 678 SMART tpr_5 446 479 IPR019734 GO:0005515
Apr9g0921 678 SMART tpr_5 281 314 IPR019734 GO:0005515
Apr9g0921 678 SMART tpr_5 400 433 IPR019734 GO:0005515
Apr9g0921 678 SMART tpr_5 247 280 IPR019734 GO:0005515
Apr9g0921 678 SMART tpr_5 514 547 IPR019734 GO:0005515
Apr9g0921 678 SMART tpr_5 213 246 IPR019734 GO:0005515
Apr9g0921 678 SMART tpr_5 480 513 IPR019734 GO:0005515
Apr9g0921 678 SUPERFAMILY TPR-like 452 560 IPR011990 GO:0005515
Apr9g0921 678 CDD TRX_family 587 674 - -
Apr9g0921 678 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0921 Apr-Chr9 17736769 17740180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0921 K09527 - gmx:100791862 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0921 9 17736769 17740180 Apr9g0921 9 17736769 17740180 ECH
Apr9g0921 9 17736769 17740180 Apr1g0105 1 1153561 1157718 PCT