Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0105 ATGGCAGGGAAAGCCAAGAACAAGATGAAACTTGAATTGGGTTGCGGTTTGATGGGGAGAATTTTGCAACTCAAAAGCAATAGGCTGAGAAAATCCTCTGTTCATTCACTACCCGTGAAGCCTAGCAACACTGCACAACACAAGGATCATGCCAAAAACGAATCCAAGAGGCCTCAAAACCATGGATCAAAGGTTCCAAAAGATAGCTTCACTGAGACTGTTCCTACACCGAAAGTGGAACAGAATCCAGCCACAAAGAGTCCCTCTAATCATCGTGCAACTTCTGCGTATCGAAACATCCAAAATGGAAGACCTTCAGATGCTGCAAGAAGCTCAGTTCAACAGAACCACGATTCCAATGATGAGTGTAAACAACAGAAAGAGCATGCTGGTAATTCTCTGGAACTTGCTATTGCTAGGATAAGTACAAGCACTAGTCATCAGCAAAACAACGAGACCAAATCCCCAGCCAAAGATTTAAGTGCCTTGAAACTCACTGGGAATTTGATTGTGAATAGCAGCCCAAGAACTAGTGTTACCAAGAATAAAGAGTTGAATTCTATGTCCAGTTCTTACAATAATAATACAAACAAAGGTTTAATGGGGAATATCTTGAGGAAGAGCGATGATGAGTTTGCACAATTTCGAAGTCCAAGGAACAGCAGAGTGGACCCTGAGGTGTTCAAATCCATGGGGAATGAAGCATACAAGCAGGGAAGATTTGGGGAAGCTTTGGCTTTGTATGATCGAGCCATTGATCTTGACTCCAATAAGGCAACGTATCATTGCAATAAGAGTGCAGCTTTAATAGGCTTGCGACGCTTTCCGCAGGCAATAGTTGAGTGTGAGGAAGCAATCAGATTGGAACCTTCGTATGGCAGAGCCCACACTCGTTTGGCAACCATATATTTCAGATTGGGAGAAGTAGAAAAGGCAATGAATTGCAATCAAACAGCCCCATATGTAGATTCCATCCTCGCTTACCAAGCTCAGACTCTTCAAAATCACCTCAACAAATGCAATGAAGCTCGGAAAGTCAATGATTGGAAATCTATATTGAAAGAAACCCAGGCTGCAATTTGCTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCCTAAGACATCAAGAGGCATACGCAACCTACGAGAAAACGCCAAAACTTGACCTTGATAGTTGTAACAAATTACTTGGCCTGGCTCGTAGTGCTTACCTATTGATGATAGGCGCACAAGTTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTGACAGCATCTCAGCATGCAGCTAAATTTGATCCAAGCAGCAACGAGGTGAATGCAATGGTAAGGAGAGCCAGAGCAGCTGCATCAGCTAGAATGAGCGGTAACCTACTTTTCAAGGCATCAAAATTCATGGAAGCATGTGCTGTATACAACGAAGGACTAGAGCATGATCCATACAACCCAATTCTGCTATGCAACAGGGCAGCATGTCGATCTAAGCTAGGCCAATTTGAAAAAGCAATTGAAGATTGTAATGTAGCCCTTATAGTTCAGCCTAGTTATAGCAAGGCAAGGTTGAGGAGGGCAGATTGTAATGCCAAGTTGGAACGATGGGAAGCTGCCATTCAAGACTACGAAATGCTAATAAGAGAAAAGCCAGTGGATGAGGAGGTGGCCAGGGCTCTGTTTGAGGCCCAGCTCCAACTCAAGATGCTACGTGGTGAAGATATTAAGGACTTGAAATTTGGTGCAAATTTGGTTTTCATCTCAAGCAATGATCGGTTTAGACATTATGTAACTTCACCCGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACCCACAAGCAAGTATTGCTTGTTTTGGAGCAAACCTGCAAGAGATACCCATCAGTTAATTTTCTTAAGGTGGAGATTGAAGACCACCCTTACTTGGCAAAATCAGAAGGTGTGAACTCCATTCCAGCCTTCAAAATATACAAGAATGGATCAAGGGTTAAAGAAATTCCAGGCAACAACCACGAATTGTTAGAAAGATCAGTTATATTATATAGCAGCTGA 2073 0.4317 MAGKAKNKMKLELGCGLMGRILQLKSNRLRKSSVHSLPVKPSNTAQHKDHAKNESKRPQNHGSKVPKDSFTETVPTPKVEQNPATKSPSNHRATSAYRNIQNGRPSDAARSSVQQNHDSNDECKQQKEHAGNSLELAIARISTSTSHQQNNETKSPAKDLSALKLTGNLIVNSSPRTSVTKNKELNSMSSSYNNNTNKGLMGNILRKSDDEFAQFRSPRNSRVDPEVFKSMGNEAYKQGRFGEALALYDRAIDLDSNKATYHCNKSAALIGLRRFPQAIVECEEAIRLEPSYGRAHTRLATIYFRLGEVEKAMNCNQTAPYVDSILAYQAQTLQNHLNKCNEARKVNDWKSILKETQAAICLGADSAPQVYALQTEALLKLLRHQEAYATYEKTPKLDLDSCNKLLGLARSAYLLMIGAQVYLAAGRFEDAVTASQHAAKFDPSSNEVNAMVRRARAAASARMSGNLLFKASKFMEACAVYNEGLEHDPYNPILLCNRAACRSKLGQFEKAIEDCNVALIVQPSYSKARLRRADCNAKLERWEAAIQDYEMLIREKPVDEEVARALFEAQLQLKMLRGEDIKDLKFGANLVFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRYPSVNFLKVEIEDHPYLAKSEGVNSIPAFKIYKNGSRVKEIPGNNHELLERSVILYSS* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0105 690 Pfam Thioredoxin 620 679 IPR013766 -
Apr1g0105 690 Coils Coil 532 552 - -
Apr1g0105 690 Pfam TPR repeat 232 264 - -
Apr1g0105 690 MobiDBLite consensus disorder prediction 32 130 - -
Apr1g0105 690 SUPERFAMILY TPR-like 462 574 IPR011990 GO:0005515
Apr1g0105 690 CDD TRX_family 599 677 - -
Apr1g0105 690 Pfam Tetratricopeptide repeat 505 558 - -
Apr1g0105 690 Pfam Tetratricopeptide repeat 419 492 - -
Apr1g0105 690 SUPERFAMILY Thioredoxin-like 578 678 IPR036249 -
Apr1g0105 690 Gene3D Glutaredoxin 586 688 - -
Apr1g0105 690 MobiDBLite consensus disorder prediction 45 63 - -
Apr1g0105 690 Gene3D Tetratricopeptide repeat domain 224 577 IPR011990 GO:0005515
Apr1g0105 690 SUPERFAMILY TPR-like 225 445 IPR011990 GO:0005515
Apr1g0105 690 SMART tpr_5 526 559 IPR019734 GO:0005515
Apr1g0105 690 SMART tpr_5 259 292 IPR019734 GO:0005515
Apr1g0105 690 SMART tpr_5 492 525 IPR019734 GO:0005515
Apr1g0105 690 SMART tpr_5 458 491 IPR019734 GO:0005515
Apr1g0105 690 SMART tpr_5 225 258 IPR019734 GO:0005515
Apr1g0105 690 SMART tpr_5 293 326 IPR019734 GO:0005515
Apr1g0105 690 SMART tpr_5 412 445 IPR019734 GO:0005515
Apr1g0105 690 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 687 IPR044534 -
Apr1g0105 690 MobiDBLite consensus disorder prediction 64 119 - -
Apr1g0105 690 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Apr1g0105 690 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0105 Apr-Chr1 1153561 1157718 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0105 K09527 - gmx:100814381 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0105 1 1153561 1157718 Apr1g0105 1 1153561 1157718 ECH
Apr9g0921 9 17736769 17740180 Apr1g0105 1 1153561 1157718 PCT