Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0776 ATGTGTTCCCTAACACCCAGTGACTTGCAACGGATTTTTGAGAAGCTGGACATGAATGGCGATGGGATTTTGAGCCTTGAGGAGCTGAACGTGCTATTAGAGAAGACAGGCTTCAAGTTTAGCATAGAAGAATTGGAATCTCTGGTGGGAAAGCAGGTCTTGGACTTCAGTGAGTTCTTGTTCTTTTATGACTCCATGTTGAAGCAAAACAATGAGGAGGAGAAAGAGACTAAAGGTGAAGGTTGTGTTGAGATTGAGGAGGTAGAAGGGGACCTTGTGAAGGCTTTCAAGGTATTTGATTTGGATGGGGATGGGTTCATCACTAGCCATGAGTTGGAGTGCGTGTTGAAGAGGCTTGGCATGTGGGATGAATGCAGTGGCAAGGATTGTAGAACAATGATTTGTTCCTATGACACTAATTTGGATGGCAAGCTTGATTTCCAGGAATTCAAGGACATGATGCTGCTTACAACTTCATGA 480 0.4396 MCSLTPSDLQRIFEKLDMNGDGILSLEELNVLLEKTGFKFSIEELESLVGKQVLDFSEFLFFYDSMLKQNNEEEKETKGEGCVEIEEVEGDLVKAFKVFDLDGDGFITSHELECVLKRLGMWDECSGKDCRTMICSYDTNLDGKLDFQEFKDMMLLTTS* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0776 159 SMART efh_1 91 119 IPR002048 GO:0005509
Apr9g0776 159 SMART efh_1 8 36 IPR002048 GO:0005509
Apr9g0776 159 SMART efh_1 129 157 IPR002048 GO:0005509
Apr9g0776 159 Pfam EF hand 9 32 IPR002048 GO:0005509
Apr9g0776 159 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 159 - -
Apr9g0776 159 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Apr9g0776 159 SUPERFAMILY EF-hand 8 155 IPR011992 -
Apr9g0776 159 CDD EFh 91 154 IPR002048 GO:0005509
Apr9g0776 159 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Apr9g0776 159 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Apr9g0776 159 Pfam EF-hand domain pair 92 154 IPR002048 GO:0005509
Apr9g0776 159 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Apr9g0776 159 Gene3D - 4 156 - -
Apr9g0776 159 ProSiteProfiles EF-hand calcium-binding domain profile. 125 159 IPR002048 GO:0005509
Apr9g0776 159 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0776 Apr-Chr9 14217079 14218176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0776 2 155 EF-hand Containing Proteins AT1G21550 45.223 1.09e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0776 K13448 - gmx:100779760 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0776 9 14217079 14218176 Apr9g0776 9 14217079 14218176 ECH
Apr9g0776 9 14217079 14218176 Apr1g0228 1 2488644 2489679 PCT