Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0228 ATGTTCTTTGCAAATATGTGTCTCCTAACCCCCAATGACTTGAAGCGAATTTTTGAGAAGTTAGACATAAATGGAGATGGGTTTGTGAGCCTTGAGGAGCTGAACCGGCTTCTACAAAAGATAGGAACTTCCCACTATAGCTTAGAAGAGTTGGAATCTCTTGTGGAAAAGAAGAGCCTTGATTTCAGTGAGTTCTTGTTTTTGTACAATAATTCTATATCAAAACAGAACAATGGGGAGAGCAAAGGTGGTGATGCAGATGATGATGATGATGATGTAGAGGAGTTGGAGAGTGACCTTGTGAAGACCTTCATGGTGTTTGATTTGGATGGTGATGGATTCATCACAAGCCAAGAATTAGGGTGTGTGTTGAAGACGCTTGGCTTGTGGGACGAAACAAGTGACAAGGATTGTAGAAGCATGATTCGCTTCTATGACACCAATTTGGATGGTCGCCTTGATTTTCAGGAATTCAAGACCATGATGTTGCTTACCAATGCCCCAAATTCTTTTCATTTTGTTTAG 525 0.4076 MFFANMCLLTPNDLKRIFEKLDINGDGFVSLEELNRLLQKIGTSHYSLEELESLVEKKSLDFSEFLFLYNNSISKQNNGESKGGDADDDDDDVEELESDLVKTFMVFDLDGDGFITSQELGCVLKTLGLWDETSDKDCRSMIRFYDTNLDGRLDFQEFKTMMLLTNAPNSFHFV* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0228 174 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Apr1g0228 174 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Apr1g0228 174 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Apr1g0228 174 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 167 - -
Apr1g0228 174 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 6 167 - -
Apr1g0228 174 Pfam EF hand 13 40 IPR002048 GO:0005509
Apr1g0228 174 Gene3D - 86 170 - -
Apr1g0228 174 ProSiteProfiles EF-hand calcium-binding domain profile. 133 168 IPR002048 GO:0005509
Apr1g0228 174 SMART efh_1 137 165 IPR002048 GO:0005509
Apr1g0228 174 SMART efh_1 13 41 IPR002048 GO:0005509
Apr1g0228 174 SMART efh_1 99 127 IPR002048 GO:0005509
Apr1g0228 174 CDD EFh 99 162 IPR002048 GO:0005509
Apr1g0228 174 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Apr1g0228 174 Pfam EF-hand domain pair 99 162 IPR002048 GO:0005509
Apr1g0228 174 Gene3D - 2 83 - -
Apr1g0228 174 SUPERFAMILY EF-hand 13 163 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0228 Apr-Chr1 2488644 2489679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0228 9 163 EF-hand Containing Proteins AT1G21550 43.226 3.13e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0228 K13448 - gmx:100527117 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0228 1 2488644 2489679 Apr1g0228 1 2488644 2489679 ECH
Apr9g0776 9 14217079 14218176 Apr1g0228 1 2488644 2489679 PCT