Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0337 ATGGTGGATCCCTACGTGTTCGGTTGGATTCTGTGCTCCGTTCTGAGTCTATTCGCTCTCTACAGTTTGGTTTTTGCCGGAAAGAGCACTCGCGCGTCGCCGGAAAAGAGGATTGAATTGTCGGAGAGCGTCACCACCGTTGCCGGAGAATGCAGATCGGCGAATAGCAACGGTGATGCTGACGTCATCATTGTCGGAGCTGGCGTCGCTGGCGCCGCTTTGGCTCACACTCTCGGCAAGGATGGGCGACGAGTACATGTCATTGAAAGAGATCTGAGTGAGCCTGACCGAATTGTGGGAGAGTTGCTACAACCTGGGGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCCCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTACCCCCTTGAGAAGTTTCACTCAGATGTTGCTGGCAGAAGCTTTCACAATGGGCGCTTTATTCAGAGGATGCGGGAGAAGGCTGCCTCCCTTCCCAATGTACGATTGGAGCAAGGAACAGTAACTTCTCTAGTTGAAGAGAGAGGGACAATTAGAGGAGTGCAATACAAGACCAAAGATGGTCAGGAATTCACAGCATATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTACGTCGTTCTCTTTGTAATCCTAAGGTAGATATTCCCTCATGTTTTGTTGGTTTAGTTTTAGAGAACTGTGAACTTCCATGTGCAAATCATGGCCACGTCATACTGGGAGATCCTTCGCCAATTCTGTTCTATCCTATAAGTAGTACAGAGGTTCGCTGTCTGGTTGATGTCCCTGGTCAGAAGGTTCCTTCTATTTCAAATGGTGAAATGGAAAAATATTTGAAGACAACGGTGGCTCCACAGGTTCCTCCCGAGATTTATAATGCCTTCATCGCTGCAGTGGACAAAGGCAGCATAAGGACAATGCCAAACAGAAGCATGCCTGCAGATCCTCTTCCTACTCCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGGCATCCACTAACAGGGGGTGGCATGACTGTAGCATTGTCTGATATTGTGGTGCTGAGAAATCTTCTCAGGCCTTTGCGTGACCTGAATGATTCATCCACACTATGTAAATACCTTGAATCGTTTTATACCTTGCGTAAGCCTGTGGCATCCACTATAAATACGTTGGCTGGAGCACTTTACAAGGTTTTTTGTGCATCCCCAGATCTGGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCCTTGGAGGCCTATTCTCGGAAGGACCAGTTTCATTACTTTCTGGATTAAACCCTCGCCCCTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTATTATTTCCATTTCCTTCACCTAATCGACTGTGGATTGGAGCCAGATTAATCTCTAGTGCATCTGCAATAATCTTCCCCATAATTAAGGCGGAGGGGATTCGTCAGATGTTTTTCCCTGCAACTGTCCCAGCTTATTACAGAACTCCTCCGGTTGAAGAAAAGTGA 1581 0.4668 MVDPYVFGWILCSVLSLFALYSLVFAGKSTRASPEKRIELSESVTTVAGECRSANSNGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLVEERGTIRGVQYKTKDGQEFTAYAPLTIVCDGCFSNLRRSLCNPKVDIPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMEKYLKTTVAPQVPPEIYNAFIAAVDKGSIRTMPNRSMPADPLPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDSSTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDLARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLFPFPSPNRLWIGARLISSASAIIFPIIKAEGIRQMFFPATVPAYYRTPPVEEK* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0337 526 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 524 - -
Apr9g0337 526 Gene3D - 52 435 IPR036188 -
Apr9g0337 526 PANTHER SQUALENE MONOOXYGENASE 1 524 IPR040125 GO:0004506|GO:0016126
Apr9g0337 526 SUPERFAMILY FAD/NAD(P)-binding domain 60 434 IPR036188 -
Apr9g0337 526 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Apr9g0337 526 Pfam Squalene epoxidase 211 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Apr9g0337 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Apr9g0337 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Apr9g0337 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Apr9g0337 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0337 Apr-Chr9 4506758 4510720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0337 42 522 Miscellaneous Gene Families AT1G58440 80.124 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0337 K00511 - gmx:100804406 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0337 9 4506758 4510720 Apr9g0337 9 4506758 4510720 ECH
Apr9g0337 9 4506758 4510720 Apr5g1434 5 18408513 18412801 PCT