Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1434 ATGGCAGTTAGGTTCCTCGAAATGGTGGATCCCTACGTTCTTGGATGGATCGTATGCTCTGTGCTTAGTCTCGTTGCGCTCCACAGTTTGGTTTTCGCACGGAGGAGCCGTTGCGCTTCATCTGAGGCCGCCGTTACGTGCGCCGATAACATAACCACCGCCGCCGGAGAATGCAGATCCTTGAACCGTGACGGAGACGTTGACGTCATCATTGTAGGAGCCGGTGTTGCTGGCTCCGCTCTCGCTCACACTCTCGGCAAGGATGGACGTCGAGTTCTTGTAATCGAAAGAGATCTGAGTGAACCAGACCGAATTGTTGGAGAGTTGCTGCAACCTGGTGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGCGTAGAAAAAATTGATGCTCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGAAAACACACACGACTCTCCTATCCCTTGGATAAGTTTCACTCGGATGTAGCTGGAAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTACCTCCCTTCCCAATGTACGATTGCAACAAGGAACTGTTACGTCCCTACTTGAAGACAAGGGGATAATTAAAGATGTTCCCTCTTGTTTCGTTGGCTTAGTTTTGGAGAACTGTGAACTTCCTTGCGCAAATCATGGCCATGTCATACTGGGAGATCCTTCGCCAGTTCTGTTCTATCCTATAAGTAGTACAGAAATTCGCTGTCTGGTTGATGTTCCCGGTCAGAAGGTTCCATCTATTTCCAATGGTGAAATGGCAAATTATTTGAAGAGAGTTATAGCTCCACAGGTTCCCCCTGAGCTTCACGAGGCTTTCATAGCTGCAGTGGACAAAGGCAATATCAGGACAATGCCAAATAGAAGCATGCCAGCGGCTCCTTATCCTACTCCCGGAGCCCTACTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACAGGGGGTGGAATGACCGTGGCATTATCTGATATAGTGTTGCTGCGAAATCTTCTCAGGCCATTGCGTGACCTGAATGATGCATCCAGCCTTTGCAAATACCTTGAATCATTTTATACCTTGCGCAAGCCTGTGGCATCCACTATAAATACGTTGGCTGGAGCCCTTTACAAGGTCTTTTGCGCATCACCTGATCCTGCGAGGAAGGAAATGCGTCAAGCTTGCTTCGATTATCTTAGTCTTGGAGGTCTATTCTCAGAAGGGCCAGTCTCATTACTATCAGGATTAAACCCTCGGCCCTTGAGCCTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGGGTTGGCCGTCTACTGCTACCGTTTCCTTCCCCTAAACGGATATGGACTGGACTTCGATTAATTTCTAGTGCATCTGGAATCATCTTGCCCATAATTAAGGCTGAAGGAGTCCGTCAGATGTTCTTTCCTGCAACTGTTTCAGCTTACTATAGAAATCCTCCGGCTGCTTAA 1482 0.475 MAVRFLEMVDPYVLGWIVCSVLSLVALHSLVFARRSRCASSEAAVTCADNITTAAGECRSLNRDGDVDVIIVGAGVAGSALAHTLGKDGRRVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLDKFHSDVAGRSFHNGRFIQRMREKATSLPNVRLQQGTVTSLLEDKGIIKDVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMANYLKRVIAPQVPPELHEAFIAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLRDLNDASSLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWTGLRLISSASGIILPIIKAEGVRQMFFPATVSAYYRNPPAA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1434 493 Pfam FAD binding domain 66 190 IPR002938 GO:0071949
Apr5g1434 493 Gene3D - 60 204 IPR036188 -
Apr5g1434 493 Gene3D - 205 383 IPR036188 -
Apr5g1434 493 PANTHER SQUALENE MONOOXYGENASE-RELATED 8 204 - -
Apr5g1434 493 PANTHER SQUALENE MONOOXYGENASE-RELATED 203 492 - -
Apr5g1434 493 Pfam Squalene epoxidase 202 452 IPR013698 GO:0004506|GO:0016021|GO:0050660
Apr5g1434 493 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 68 90 - -
Apr5g1434 493 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 322 - -
Apr5g1434 493 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 322 338 - -
Apr5g1434 493 SUPERFAMILY FAD/NAD(P)-binding domain 66 404 IPR036188 -
Apr5g1434 493 PANTHER SQUALENE MONOOXYGENASE 203 492 IPR040125 GO:0004506|GO:0016126
Apr5g1434 493 PANTHER SQUALENE MONOOXYGENASE 8 204 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1434 Apr-Chr5 18408513 18412801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1434 50 492 Miscellaneous Gene Families AT1G58440 72.878 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1434 K00511 - gmx:100820031 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1434 5 18408513 18412801 Apr5g1434 5 18408513 18412801 ECH
Apr9g0337 9 4506758 4510720 Apr5g1434 5 18408513 18412801 PCT