Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0193 ATGTCTTCCTTTTCCACTCTCAGGAGATCACCACCCTTCCTCACCCAACACTTCTCCATCCAACGCTTCCAAATCCACCACTCTTCAACCTCTTCTTCCACATCGTCGCTGCTGAAAACCGCCAACCCGGTTCACCGAACCGGGTTCGGGCGAAAGTGGTTTCCAAGCGTCCTAGCTGGCACCAGTCTAGGGCTTCTTCTGTACTGCTTCTTTTTCTCTGCACTTAATTCAGAGTTCGATTCAGCTTTGCTTAAAACCTCACTCTCTTCTTTCGTTGACCGGTCAGCACCCACTTCTGATGACCAAAACCGACGTCGTTCCTTGTTTGATAATTTTTCCCTCCCTGAAAGCACCGGCACCTTGCTATTCGGAGATGCGTTCAGGAGAAAGATTTTCTTCAACTACGAGAAGCGCATACGCTTGCGTAGTCCTCCTGAAAAGGTTTTTGAGTACTTTGCATCTGATCGCAGCTCAGAAGGAGAGCTAATGATGAAACCAGTGGATCTAATGAGGGCAGTGGTTCCTGTTTTTCCTCCATCTGAGTCCCACCTTGTTAGAGATGGATACTTGAAAGGAGAAAGAAATCCCGGCCATTTGTGCTGTGATCCTTCTGAATTTTTCATGCTTTTTGATGTAAACAATGATGGACTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCGGAATCAAGCTTTTCAGTGGCATTTAAAATGTTTGATGTGGACAACAGTGGGGAGATAAGTAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAATTGGCCTAAAGGTGAATGATTCTGTGGAAAATGGAGGCTTGGTGGAATACTTTTTTGGTAAAGATGGGAATGAATGCCTGCAGCATGATAAATTCGTAAAATTTTTGAGAGACTTGCATGATGAAATTTTGAGGCTGGAGTTTGCACATTATGACTACAAATCTCTAAAATCCATATCAGCCAAGGACTTTGCTCTCTCCATGGTTGCTTCTGCCGACATGAGTCATCTAGGCAGGTTGCTTGAACGGGTTGATCAATTGAATGATGATCCACATTTTAAGGATGTACGCATCACATTTGAGGATTTCAAAAGCTTTGCAGAGCTACGGAAAAAGTTATTACCATTCTCTTTGGCCCTTTTCAGTTTTGGTGAAGTAAATGGCCTGTTAACGAGGGATGATTTTCAGCGAGCAGCATCACATGTGTGCAGCATCTCTCTCTCAGACAATGTAGTTGACATTGTTTTCCATTTGTTTGACACAAATCGGGATGGAAACCTAAGTTCAGATGAGTTCATCAGAGTGCTACACAGGCGTGAAAGGAACACTACACAACCAGTGGAGACAGGAATACTAGGTTTATTGTCTTGCTGCTGGAATTGTACGGATAACTTTTCTTCTTAA 1461 0.4346 MSSFSTLRRSPPFLTQHFSIQRFQIHHSSTSSSTSSLLKTANPVHRTGFGRKWFPSVLAGTSLGLLLYCFFFSALNSEFDSALLKTSLSSFVDRSAPTSDDQNRRRSLFDNFSLPESTGTLLFGDAFRRKIFFNYEKRIRLRSPPEKVFEYFASDRSSEGELMMKPVDLMRAVVPVFPPSESHLVRDGYLKGERNPGHLCCDPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNSGEISKEEFKKVMALMRSRHRQGVHHRDGLRIGLKVNDSVENGGLVEYFFGKDGNECLQHDKFVKFLRDLHDEILRLEFAHYDYKSLKSISAKDFALSMVASADMSHLGRLLERVDQLNDDPHFKDVRITFEDFKSFAELRKKLLPFSLALFSFGEVNGLLTRDDFQRAASHVCSISLSDNVVDIVFHLFDTNRDGNLSSDEFIRVLHRRERNTTQPVETGILGLLSCCWNCTDNFSS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0193 486 ProSiteProfiles EF-hand calcium-binding domain profile. 232 267 IPR002048 GO:0005509
Apr9g0193 486 Pfam EF-hand domain pair 407 457 IPR002048 GO:0005509
Apr9g0193 486 SUPERFAMILY EF-hand 323 458 IPR011992 -
Apr9g0193 486 Gene3D - 143 287 - -
Apr9g0193 486 CDD EFh 205 262 IPR002048 GO:0005509
Apr9g0193 486 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Apr9g0193 486 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 485 IPR039800 GO:0005509|GO:0006851
Apr9g0193 486 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Apr9g0193 486 SUPERFAMILY EF-hand 205 457 IPR011992 -
Apr9g0193 486 Pfam EF hand 206 223 IPR002048 GO:0005509
Apr9g0193 486 Gene3D - 344 469 - -
Apr9g0193 486 CDD EFh_MICU 237 458 - -
Apr9g0193 486 SMART efh_1 202 230 IPR002048 GO:0005509
Apr9g0193 486 SMART efh_1 430 458 IPR002048 GO:0005509
Apr9g0193 486 SMART efh_1 236 264 IPR002048 GO:0005509
Apr9g0193 486 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 485 - -
Apr9g0193 486 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Apr9g0193 486 Pfam EF hand 240 263 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0193 Apr-Chr9 2463464 2469999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0193 20 420 EF-hand Containing Proteins AT4G32060 62.379 4.94e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0193 K22827 - gmx:100806575 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0193 9 2463464 2469999 Apr9g0193 9 2463464 2469999 ECH
Apr9g0193 9 2463464 2469999 Apr5g1286 5 17161441 17164812 PCT