Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1286 ATGTCTTCCTTTTCCACTCTCCGAAGATTCTCTCTGTTCTTCCAACGATTCCGCACTCTCCACACTTCCACTTCTCAGTCATCTCCCAACCCACGCCACAATCACAAGTTGGGTTCGGCCATTGTTGTAGCTTCTGCTCTTGCCCTTTTGTATTGCTTCTCCACACCCAATTCTGCCTCTCGCAGTTCTTCACCATCGTTGTTTCAAAAATCATCCCTTCCTGAAACTACTCACGGATTGCTTTTTGGAGATGAGTACAGGAGTAAGGTTTTCTTCAACTATGAGAAGCGCCTTCGGTTGCATAGTCCACCGGAAAAGGTTTTTGAATACTTTGCATCTTGCCGTGGTCTAGAAGGAGAGCTATTCATGAAGCCAGTGGACCTGATGCGAGCAGTTGTTCCGGTTTTCCCTCCATCTGAATCCAACCTGGTTAGAGAGGGATACTTGAAAGGTGAAAGAAGTCCTGGCCATTTACGTTGTCCCCCTTCGGAATTTTTTATGCTTTTTGATGTAAACAGCGACGAGCTTATATCTTTCAAAGAGTATATCTTTTTTGTAACTCTGCTTAGCATCCCAGAATCAAGCTTTTCTGCCGCATTTAAAATGTTTGACAAGGATAATGATGGGGAGATAGACATGGAAGAATTCAAGAAAGTGATGGCATCAATGCGATCTCATACCAGGCAGGGTGTTCACCACAGGGATGGACGACAAACTGGTCTAAAGGCTGATGGTTCTGTAGAAAATGGAGGGCTGGTGGAATACTTATTTGGTAAAGATGGAAAGGGACGCCTCAAACATGATAAATTTGTGCAGTTTATAAGAGACTTGCATGATGAAATTCTGAGGCTGGAGTTTGCTCATTATGATTACAAATCTTGTAAAACTATATCGGCCAAGGACTTTGCACACTCTATAGTTGCTTCTGCTGATTTGAGTCATCTAGGCAGGTTGCTTGAACGAGTTGATGAATTGAACAATGATCCACGCTTTAGGGATGTACGCATCACATTTGAGGAGTTCAAAAATTTTGCAGAGCTTCGGAGAAAATTATTACCATTTTCATTGGCCATTTTCAGTTTTGCAAAAGTACATGGCCTATTAGCAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGCGGTTTATCTCTCTCTGACAATGTTGTTGAGATTGTTTTCCATTTGTTTGACACAAATGGGGATGGAAACCTAAGTACAAACGAGTTTGTCAAAGTGTTGCATAGTCGAGAAAGAGACATTGCTGAACCTGTTGAGACAGGAATCATGGGTTTCTTGTCATGTTGCTGGAACTGTACCAATACCTCCCCATCTTCACGTTTGTTTTCCTGA 1353 0.4242 MSSFSTLRRFSLFFQRFRTLHTSTSQSSPNPRHNHKLGSAIVVASALALLYCFSTPNSASRSSSPSLFQKSSLPETTHGLLFGDEYRSKVFFNYEKRLRLHSPPEKVFEYFASCRGLEGELFMKPVDLMRAVVPVFPPSESNLVREGYLKGERSPGHLRCPPSEFFMLFDVNSDELISFKEYIFFVTLLSIPESSFSAAFKMFDKDNDGEIDMEEFKKVMASMRSHTRQGVHHRDGRQTGLKADGSVENGGLVEYLFGKDGKGRLKHDKFVQFIRDLHDEILRLEFAHYDYKSCKTISAKDFAHSIVASADLSHLGRLLERVDELNNDPRFRDVRITFEEFKNFAELRRKLLPFSLAIFSFAKVHGLLARDDFQRAASHVCGLSLSDNVVEIVFHLFDTNGDGNLSTNEFVKVLHSRERDIAEPVETGIMGFLSCCWNCTNTSPSSRLFS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1286 450 CDD EFh 164 221 IPR002048 GO:0005509
Apr5g1286 450 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Apr5g1286 450 SUPERFAMILY EF-hand 256 347 IPR011992 -
Apr5g1286 450 Gene3D - 252 358 - -
Apr5g1286 450 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 450 IPR039800 GO:0005509|GO:0006851
Apr5g1286 450 Pfam EF-hand domain pair 370 414 IPR002048 GO:0005509
Apr5g1286 450 Pfam EF hand 197 223 IPR002048 GO:0005509
Apr5g1286 450 ProSiteProfiles EF-hand calcium-binding domain profile. 191 226 IPR002048 GO:0005509
Apr5g1286 450 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 450 - -
Apr5g1286 450 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Apr5g1286 450 Gene3D - 365 426 - -
Apr5g1286 450 SUPERFAMILY EF-hand 164 415 IPR011992 -
Apr5g1286 450 SMART efh_1 161 189 IPR002048 GO:0005509
Apr5g1286 450 SMART efh_1 195 223 IPR002048 GO:0005509
Apr5g1286 450 SMART efh_1 389 417 IPR002048 GO:0005509
Apr5g1286 450 CDD EFh_MICU 196 417 - -
Apr5g1286 450 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Apr5g1286 450 Gene3D - 141 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1286 Apr-Chr5 17161441 17164812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1286 66 382 EF-hand Containing Proteins AT4G32060 69.401 1.15e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1286 K22827 - gmx:100786375 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0193 9 2463464 2469999 Apr5g1286 5 17161441 17164812 PCT